Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 2.9e-260 901.4 455 100.0
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 9.5e-219 763.5 455 83.5
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 3.7e-215 751.5 455 80.9
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 3.7e-215 751.5 455 80.9
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 9.2e-214 746.9 455 80.7
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 1.9e-211 739.2 455 80.4
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 4.0e-209 731.5 453 79.2
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 8.3e-207 723.8 468 76.7
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 8.3e-207 723.8 453 78.4
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 1.1e-206 723.4 489 75.5
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 2.4e-206 722.2 457 78.6
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 4.1e-206 721.5 455 77.4
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 5.4e-206 721.1 453 79.0
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 2.1e-205 719.2 453 77.9
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 2.3e-204 715.7 453 78.4
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 3.0e-204 715.3 453 78.4
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 6.6e-204 714.1 458 79.3
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 1.5e-203 713.0 453 77.5
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 2.5e-203 712.2 455 78.0
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 5.6e-203 711.1 455 76.7
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 7.3e-203 710.7 467 77.7
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 6.2e-202 707.6 457 76.6
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 1.4e-201 706.4 453 76.4
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 3.1e-201 705.3 453 76.6
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 6.8e-201 704.1 453 75.9
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 6.8e-201 704.1 453 76.4
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 5.8e-200 701.0 455 76.7
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 9.9e-200 700.3 457 75.7
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 2.2e-199 699.1 455 74.5
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 2.4e-198 695.7 453 75.7
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 1.6e-197 693.0 453 75.1
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 3.5e-197 691.8 453 74.6
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 6.0e-197 691.0 452 75.0
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 6.0e-197 691.0 462 75.8
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 7.8e-197 690.6 453 75.5
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 1.7e-196 689.5 455 75.2
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 1.7e-196 689.5 489 72.2
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 2.3e-196 689.1 453 74.4
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 6.6e-196 687.6 454 74.9
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 8.6e-196 687.2 453 75.3
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 1.9e-195 686.0 453 74.4
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 3.3e-195 685.3 454 74.7
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 4.3e-195 684.9 453 74.8
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 5.6e-195 684.5 454 74.9
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 7.3e-195 684.1 461 74.4
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 9.6e-195 683.7 455 73.4
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 2.1e-194 682.6 474 73.0
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 4.7e-194 681.4 453 73.3
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 1.1e-193 680.2 455 73.0
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 6.9e-193 677.6 453 73.7
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 1.2e-192 676.8 468 74.4
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 2.6e-192 675.6 482 71.6
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 3.4e-192 675.2 460 73.5
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 3.4e-192 675.2 458 73.4
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 5.8e-192 674.5 456 73.5
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 7.6e-192 674.1 455 71.9
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 4.9e-191 671.4 449 72.8
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 4.9e-191 671.4 455 72.1
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 6.4e-191 671.0 455 71.6
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 6.4e-191 671.0 455 71.9
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 1.1e-190 670.2 486 69.5
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 1.9e-190 669.5 449 72.4
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 1.9e-190 669.5 450 72.9
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 4.2e-190 668.3 456 72.8
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 1.2e-189 666.8 453 72.2
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 2.1e-189 666.0 482 71.8
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 4.6e-189 664.8 440 73.4
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 7.3e-187 657.5 455 71.0
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 9.6e-187 657.1 474 69.4
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 9.6e-187 657.1 461 73.3
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 6.2e-186 654.4 471 68.4
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 1.4e-182 643.3 456 70.4
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 9.3e-182 640.6 416 76.2
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 6.0e-181 637.9 450 68.7
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 5.6e-179 631.3 453 70.9
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.6e-178 629.8 453 68.0
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 1.8e-177 626.3 453 69.8
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.4e-174 615.9 409 74.6
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 1.1e-171 607.1 495 65.5
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 1.5e-171 606.7 444 68.2
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 8.2e-170 600.9 400 74.2
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 8.2e-170 600.9 516 62.2
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 2.9e-167 592.4 453 67.1
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 3.2e-166 589.0 455 68.8
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 5.5e-166 588.2 453 66.7
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 1.0e-164 583.9 386 74.9
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 2.2e-162 576.2 453 65.6
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 2.2e-162 576.2 557 56.9
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 4.8e-162 575.1 405 72.6
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.5e-160 570.1 516 59.7
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 3.6e-157 558.9 453 64.2
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 1.8e-156 556.6 357 77.6
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 7.4e-155 551.2 496 60.1
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 7.9e-149 531.2 430 64.4
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.4e-148 530.4 487 58.9
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.4e-148 530.4 342 75.7
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 9.1e-145 517.7 453 54.5
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 3.2e-142 509.2 327 75.8
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 4.0e-132 475.7 298 79.9
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 4.8e-130 468.8 454 52.0
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 4.7e-125 452.2 418 58.9
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 7.0e-121 438.3 456 48.2
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 2.3e-119 433.3 298 72.5
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 3.8e-119 432.6 507 48.9
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.8e-113 413.7 344 65.7
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 2.7e-112 409.8 448 47.5
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 8.0e-109 398.3 448 45.3
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 7.5e-107 391.7 270 72.2
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 4.1e-97 359.4 276 66.3
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.6e-96 357.5 232 76.7
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 1.2e-93 347.8 436 46.3
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 4.4e-83 312.8 207 73.9
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 5.8e-75 285.8 258 60.1
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 8.1e-69 265.4 238 61.3
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 6.4e-66 255.8 285 49.8
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 5.1e-63 246.1 224 53.6
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 5.6e-62 242.7 174 69.0
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 7.4e-62 242.3 183 65.6
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 1.3e-61 241.5 453 33.1
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 1.2e-59 235.0 148 76.4
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 3.9e-55 219.9 460 30.4
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 8.7e-55 218.8 553 28.0
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 1.1e-54 218.4 506 30.4
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 5.6e-54 216.1 327 43.7
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.2e-45 187.6 130 70.8
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 8.2e-37 159.1 111 78.4
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.2e-34 151.0 97 71.1
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.0e-31 140.6 118 56.8
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 9.7e-30 135.6 98 62.2
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 9.7e-30 135.6 98 62.2
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.7e-24 116.7 94 57.4
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 8.8e-23 112.5 60 86.7
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.3e-21 108.6 72 77.8
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 2.8e-21 107.5 58 86.2
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 4.1e-20 103.6 71 74.6
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 5.3e-20 103.2 71 74.6
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 7.0e-20 102.8 188 39.9
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 5.0e-18 96.7 81 56.8
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 9.7e-14 82.4 52 71.2
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 1.1e-12 79.0 55 65.5
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.1e-12 79.0 58 60.3
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 4.1e-12 77.0 64 57.8
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.9e-10 70.9 53 69.8
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 1.5e-06 58.5 70 50.0
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.5e-06 58.5 38 65.8
Glyma.13G152440 Glycine max HOM05D005098 ORTHO05D046693 2.0e-06 58.2 52 63.5


User provided reference genes

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