Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 1.8e-187 659.1 327 100.0
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 5.5e-128 461.5 323 71.2
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 3.0e-126 455.7 291 72.5
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 8.9e-126 454.1 311 70.4
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 8.9e-126 454.1 325 67.4
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.4e-125 452.2 328 67.4
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 8.3e-124 447.6 303 69.0
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.3e-121 440.3 322 66.8
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.9e-121 439.1 322 66.8
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.9e-121 438.7 290 71.4
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 8.6e-121 437.6 332 65.7
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.1e-120 437.2 315 67.9
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 5.6e-120 434.9 286 71.3
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.2e-119 433.7 299 70.2
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.6e-119 433.3 315 65.4
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.8e-119 432.6 290 70.3
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 6.1e-119 431.4 290 70.7
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.0e-118 430.6 287 70.4
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 5.2e-118 428.3 296 67.9
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 5.2e-118 428.3 287 69.0
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 6.8e-118 427.9 324 64.2
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 8.9e-118 427.6 302 65.6
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.2e-117 427.2 290 69.3
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.2e-117 427.2 300 66.0
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.6e-117 426.0 327 64.8
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 5.8e-117 424.9 319 64.9
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 7.5e-117 424.5 346 60.4
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 3.7e-116 422.2 313 64.5
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.4e-115 420.2 292 68.8
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.1e-115 418.7 289 67.8
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.1e-115 418.7 322 64.0
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 5.4e-115 418.3 296 65.5
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 9.2e-115 417.5 308 66.6
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 9.2e-115 417.5 320 63.1
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.3e-113 412.9 286 66.1
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 6.6e-113 411.4 288 66.0
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 2.5e-112 409.5 283 67.5
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 2.5e-112 409.5 290 66.2
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.3e-112 408.7 290 66.2
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 4.3e-112 408.7 290 67.2
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 2.8e-111 406.0 288 67.0
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.8e-110 403.3 324 61.4
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 2.6e-109 399.4 324 60.8
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 2.6e-109 399.4 301 64.5
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 3.4e-109 399.1 298 65.4
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.4e-109 398.7 260 70.8
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 5.8e-109 398.3 324 59.9
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 9.8e-109 397.5 293 63.8
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.7e-108 396.7 284 65.5
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 1.7e-108 396.7 296 63.5
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.7e-108 396.7 249 73.5
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.9e-107 393.3 303 63.0
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 4.1e-107 392.1 317 60.6
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 7.1e-107 391.3 296 62.8
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 2.1e-106 389.8 316 60.4
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 3.5e-106 389.0 255 71.0
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 3.5e-106 389.0 282 64.2
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.3e-105 387.1 256 69.9
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 4.3e-104 382.1 284 60.9
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 4.3e-104 382.1 285 61.1
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 1.6e-103 380.2 316 61.1
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.6e-103 380.2 304 59.9
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 2.8e-103 379.4 295 59.7
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 2.8e-103 379.4 286 60.8
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 6.2e-103 378.3 251 68.9
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.4e-102 377.1 284 60.2
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 2.3e-102 376.3 284 59.9
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 2.3e-102 376.3 284 62.0
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 4.0e-102 375.6 295 59.0
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 6.8e-102 374.8 309 58.3
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.2e-101 374.0 311 56.9
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 2.0e-101 373.2 261 64.4
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 2.0e-101 373.2 284 59.5
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 2.0e-101 373.2 284 59.5
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 2.6e-101 372.9 312 56.1
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 5.8e-101 371.7 284 60.6
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 9.9e-101 370.9 250 68.4
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 2.2e-100 369.8 312 56.4
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 6.4e-100 368.2 284 59.9
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 3.9e-97 359.0 249 67.5
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.1e-96 357.5 222 73.9
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 8.1e-95 351.3 285 59.6
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 3.1e-94 349.4 249 64.3
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 4.9e-92 342.0 311 53.7
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.4e-91 340.5 264 59.5
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 5.4e-91 338.6 271 58.3
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 1.6e-87 327.0 284 53.9
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 1.5e-85 320.5 235 65.5
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.6e-85 319.7 285 56.1
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.7e-84 317.0 290 54.8
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.8e-84 315.8 290 54.8
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 8.4e-84 314.7 283 55.8
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 3.2e-83 312.8 278 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 5.4e-83 312.0 295 48.5
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 2.7e-82 309.7 234 64.5
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 7.3e-80 301.6 198 70.2
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 3.6e-79 299.3 293 52.6
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.5e-77 292.4 190 70.5
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 2.9e-76 289.7 324 47.2
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.1e-75 287.7 301 46.2
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 1.9e-75 287.0 564 33.3
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 7.9e-74 281.6 190 67.4
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 5.1e-73 278.9 306 43.5
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 1.9e-72 276.9 166 76.5
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.2e-67 259.2 301 46.5
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.9e-64 250.4 153 73.9
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 8.2e-63 245.0 154 70.8
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.3e-57 227.6 244 49.2
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 3.0e-57 226.5 166 67.5
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.9e-56 223.8 244 48.4
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 6.9e-54 215.3 179 59.2
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 1.2e-53 214.5 273 43.2
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 2.6e-53 213.4 148 65.5
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 4.5e-53 212.6 163 66.3
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.8e-44 183.0 232 46.1
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 1.1e-43 181.4 127 64.6
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 1.4e-43 181.0 216 38.4
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 5.7e-40 169.1 148 58.8
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 7.4e-40 168.7 112 67.0
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.3e-39 167.9 195 48.2
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.2e-37 161.4 313 34.5
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 7.7e-37 158.7 149 55.7
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 1.0e-33 148.3 143 52.4
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.1e-30 138.3 100 69.0
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 8.5e-28 128.6 100 60.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.5e-27 127.9 78 67.9
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 1.2e-26 124.8 100 59.0
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 7.7e-21 105.5 76 63.2
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.0e-20 105.1 67 71.6
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.5e-16 91.3 167 38.3
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 5.4e-14 82.8 104 49.0
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.8e-12 76.6 99 43.4
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 6.6e-12 75.9 78 52.6


User provided reference genes

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