Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g34390 Coffea canephora HOM05D006106 ORTHO05D007662 1.6e-73 279.3 137 100.0
Cc11_g03820 Coffea canephora HOM05D006106 ORTHO05D015839 8.4e-62 240.4 137 88.3
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 1.3e-51 206.5 121 86.0
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.3e-33 146.7 131 57.3
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 5.5e-29 131.3 123 54.5
CSS0047930 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 9.4e-29 130.6 128 53.9
Cc06_g05840 Coffea canephora HOM05D006106 ORTHO05D007662 1.1e-24 117.1 55 98.2
COL.COLO4_28305 Corchorus olitorius HOM05D006106 ORTHO05D034875 2.6e-23 112.5 109 52.3
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 5.9e-23 111.3 116 46.6
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 1.1e-21 107.1 115 46.1
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 1.5e-21 106.7 116 44.8
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 1.5e-21 106.7 116 44.8
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.3e-19 99.4 97 54.6
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 2.0e-18 96.3 120 45.0
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 1.7e-17 93.2 99 48.5
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 6.3e-17 91.3 63 63.5
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 8.3e-17 90.9 128 43.0
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 8.3e-17 90.9 92 53.3
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 3.8e-14 82.0 75 58.7
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 3.8e-14 82.0 71 59.2
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 6.5e-14 81.3 71 57.7
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 6.5e-14 81.3 71 57.7
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 1.1e-13 80.5 59 62.7
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 4.2e-13 78.6 63 55.6
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 4.2e-13 78.6 67 56.7
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 1.2e-12 77.0 54 64.8
Rhsim03G0026600 Rhododendron simsii HOM05D006106 ORTHO05D007662 2.1e-12 76.3 129 36.4
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 2.7e-12 75.9 117 36.8
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 4.0e-11 72.0 64 57.8
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 1.2e-10 70.5 56 53.6
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 7.5e-10 67.8 76 43.4
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 1.7e-09 66.6 50 64.0
SEGI_09862 Sequoiadendron giganteum HOM05D006106 ORTHO05D007662 4.8e-09 65.1 96 34.4
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 1.4e-08 63.5 52 55.8
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 1.8e-08 63.2 105 35.2
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 4.1e-08 62.0 69 46.4
Actinidia26149 Actinidia chinensis HOM05D007322 ORTHO05D009029 5.4e-08 61.6 124 29.0
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 5.4e-08 61.6 58 55.2
Rhsim09G0172900 Rhododendron simsii HOM05D006106 ORTHO05D007662 7.0e-08 61.2 114 36.0
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.6e-07 60.1 128 33.6
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 2.0e-07 59.7 111 31.5
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 2.7e-07 59.3 111 30.6
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 2.7e-07 59.3 111 30.6
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 2.7e-07 59.3 120 31.7
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 2.7e-07 59.3 121 28.1
arahy.Tifrunner.gnm1.ann1.54V88C Arachis hypogaea HOM05D014016 ORTHO05D009715 3.5e-07 58.9 130 32.3
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 3.5e-07 58.9 121 28.9
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 4.5e-07 58.5 120 28.3
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 5.9e-07 58.2 127 30.7
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 7.7e-07 57.8 120 28.3
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 7.7e-07 57.8 120 28.3
Os02g0679200 Oryza sativa ssp. japonica HOM05D007383 ORTHO05D009254 7.7e-07 57.8 109 36.7
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 1.0e-06 57.4 112 28.6
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 1.0e-06 57.4 109 30.3
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 1.3e-06 57.0 120 27.5
Medtr1g039290 Medicago truncatula HOM05D010072 ORTHO05D011797 1.3e-06 57.0 124 26.6
RcHm_v2.0_Chr7g0232061 Rosa chinensis HOM05D007884 ORTHO05D009968 1.7e-06 56.6 116 31.0
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 1.7e-06 56.6 120 29.2
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 2.3e-06 56.2 122 27.9
DCAR_009287 Daucus carota HOM05D000855 ORTHO05D008530 2.3e-06 56.2 122 27.9
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 2.3e-06 56.2 120 29.2
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 2.3e-06 56.2 134 27.6
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 2.3e-06 56.2 107 32.7
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 2.9e-06 55.8 122 27.0
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 2.9e-06 55.8 120 26.7
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 2.9e-06 55.8 120 28.3
HPP92_007727 Vanilla planifolia HOM05D007383 ORTHO05D009254 2.9e-06 55.8 107 32.7
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 2.9e-06 55.8 121 27.3
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 3.8e-06 55.5 123 27.6
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 3.8e-06 55.5 105 30.5
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 3.8e-06 55.5 120 26.7
AagrBONN_evm.TU.Sc2ySwM_362.1190 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.0e-06 55.1 121 29.8
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 5.0e-06 55.1 120 25.8
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 5.0e-06 55.1 105 29.5
CSS0013853 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 5.0e-06 55.1 120 27.5
CSS0023086 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 5.0e-06 55.1 120 27.5
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 5.0e-06 55.1 120 25.8
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 5.0e-06 55.1 120 26.7
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 5.0e-06 55.1 120 26.7
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 5.0e-06 55.1 124 28.2
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 6.6e-06 54.7 123 26.8
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 6.6e-06 54.7 105 30.5
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 6.6e-06 54.7 105 31.4
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 6.6e-06 54.7 120 25.8
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 6.6e-06 54.7 120 26.7
SMO010G0006 Selaginella moellendorffii HOM05D000855 ORTHO05D000003 6.6e-06 54.7 104 31.7
Cpa.g.sc224.1 Carica papaya HOM05D006106 ORTHO05D007662 8.6e-06 54.3 102 32.4
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 8.6e-06 54.3 105 31.4
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 8.6e-06 54.3 120 28.3
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 8.6e-06 54.3 120 27.5
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 8.6e-06 54.3 122 27.0


User provided reference genes

Program Settings