Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 7.0e-93 344.0 177 100.0
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 5.5e-90 334.3 176 97.7
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 2.3e-88 328.9 177 96.0
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 6.8e-88 327.4 177 96.0
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 3.1e-56 222.2 182 64.8
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.4e-53 213.4 180 62.2
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 2.7e-52 209.1 179 64.2
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 3.5e-52 208.8 179 61.5
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 1.0e-51 207.2 179 61.5
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 3.9e-51 205.3 179 61.5
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 1.6e-49 199.9 178 58.4
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 4.7e-49 198.4 185 56.8
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 1.1e-48 197.2 177 58.8
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.1e-48 197.2 179 60.3
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 1.8e-48 196.4 176 58.5
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 2.4e-48 196.1 177 60.5
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 6.8e-48 194.5 179 58.1
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 8.9e-48 194.1 188 59.0
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 1.5e-47 193.4 179 59.8
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 3.4e-47 192.2 178 57.9
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 3.4e-47 192.2 179 55.9
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 5.8e-47 191.4 190 55.3
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 2.2e-46 189.5 177 57.1
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 3.8e-46 188.7 177 57.6
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 6.4e-46 188.0 186 55.9
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 6.4e-46 188.0 178 57.9
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 8.4e-46 187.6 179 57.0
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 8.4e-46 187.6 177 57.1
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 1.1e-45 187.2 217 49.3
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 1.4e-45 186.8 177 57.6
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 2.4e-45 186.0 183 56.3
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 1.2e-44 183.7 184 56.5
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 2.1e-44 183.0 189 55.6
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 4.6e-44 181.8 192 54.2
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 6.0e-44 181.4 202 51.5
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 6.0e-44 181.4 180 53.9
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 6.0e-44 181.4 189 51.9
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 7.8e-44 181.0 184 53.8
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 7.8e-44 181.0 200 51.0
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 1.0e-43 180.6 210 48.6
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 1.7e-43 179.9 210 48.6
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.7e-43 179.9 186 54.3
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 1.7e-43 179.9 176 55.1
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 2.3e-43 179.5 192 55.7
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 2.3e-43 179.5 178 56.7
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 3.0e-43 179.1 187 52.9
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 5.1e-43 178.3 179 54.7
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 6.6e-43 177.9 202 50.0
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 6.6e-43 177.9 176 54.5
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 6.6e-43 177.9 176 54.5
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 8.7e-43 177.6 178 55.1
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 8.7e-43 177.6 210 49.0
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 1.1e-42 177.2 206 49.5
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 4.3e-42 175.3 183 53.6
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 9.6e-42 174.1 208 49.5
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 1.3e-41 173.7 192 49.0
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 1.6e-41 173.3 208 46.6
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 3.6e-41 172.2 152 57.2
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 6.2e-41 171.4 205 48.8
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 6.2e-41 171.4 186 50.0
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 1.1e-40 170.6 215 44.7
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 1.8e-40 169.9 187 51.9
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 2.4e-40 169.5 205 45.9
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 4.0e-40 168.7 187 48.1
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 5.3e-40 168.3 118 66.1
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 5.3e-40 168.3 206 47.6
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 9.0e-40 167.5 211 45.5
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 1.2e-39 167.2 210 46.2
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 1.2e-39 167.2 210 46.2
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 1.2e-39 167.2 210 46.2
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 2.0e-39 166.4 183 49.7
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 2.6e-39 166.0 142 61.3
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 4.4e-39 165.2 153 55.6
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 5.8e-39 164.9 154 55.8
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 9.9e-39 164.1 209 45.9
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 1.3e-38 163.7 151 57.0
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 2.9e-38 162.5 176 54.5
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 6.4e-38 161.4 205 45.4
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 1.1e-37 160.6 210 46.7
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 2.4e-37 159.5 136 57.4
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 7.1e-37 157.9 225 44.4
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 7.1e-37 157.9 196 46.9
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 1.2e-36 157.1 144 57.6
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 1.2e-36 157.1 145 57.2
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 2.7e-36 156.0 182 51.1
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 4.6e-36 155.2 144 56.9
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 7.9e-36 154.5 149 53.0
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 3.0e-35 152.5 119 60.5
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 5.1e-35 151.8 119 60.5
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 6.6e-35 151.4 179 51.4
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 8.7e-35 151.0 134 55.2
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 8.7e-35 151.0 182 44.0
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 8.7e-35 151.0 231 40.3
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 2.5e-34 149.4 154 50.0
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 5.6e-34 148.3 134 53.7
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 5.6e-34 148.3 99 71.7
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 7.3e-34 147.9 106 67.0
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.3e-33 147.1 186 48.4
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 1.3e-33 147.1 118 61.0
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 1.6e-33 146.7 192 43.2
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 1.6e-33 146.7 122 59.8
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 2.1e-33 146.4 134 53.0
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 2.8e-33 146.0 169 48.5
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 2.8e-33 146.0 149 50.3
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 3.6e-33 145.6 220 43.2
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 4.8e-33 145.2 146 53.4
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 4.8e-33 145.2 153 49.0
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 4.8e-33 145.2 148 51.4
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 3.1e-32 142.5 156 52.6
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 1.0e-27 127.5 179 44.7
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 1.0e-27 127.5 179 44.7
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 1.9e-26 123.2 117 53.8
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 4.3e-26 122.1 205 40.0
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 1.3e-25 120.6 118 54.2
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 1.3e-25 120.6 158 44.3
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.6e-25 120.2 110 51.8
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.6e-25 120.2 110 52.7
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 2.1e-25 119.8 108 58.3
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 5.8e-23 111.7 178 36.5
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 6.9e-16 88.2 171 33.9
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 6.5e-14 81.6 53 71.7
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.4e-13 80.5 72 43.1
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 6.1e-12 75.1 142 34.5
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 1.1e-08 64.3 174 29.3


User provided reference genes

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