Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 7.0e-19 96.3 49 100.0
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 4.6e-18 93.6 47 97.9
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 4.3e-16 87.0 47 89.4
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 5.6e-16 86.7 47 87.2
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 5.6e-16 86.7 47 87.2
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 5.6e-16 86.7 47 87.2
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 7.3e-16 86.3 47 87.2
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 7.3e-16 86.3 47 89.4
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 7.3e-16 86.3 47 87.2
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 9.5e-16 85.9 47 89.4
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 9.5e-16 85.9 47 89.4
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 1.2e-15 85.5 47 87.2
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 1.2e-15 85.5 47 87.2
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 87.2
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 1.6e-15 85.1 47 85.1
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 2.1e-15 84.7 47 83.0
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 2.1e-15 84.7 47 83.0
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 2.1e-15 84.7 47 85.1
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 2.1e-15 84.7 47 83.0
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 2.8e-15 84.3 47 85.1
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 2.8e-15 84.3 47 87.2
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 2.8e-15 84.3 47 87.2
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 3.6e-15 84.0 47 85.1
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 3.6e-15 84.0 47 85.1
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 3.6e-15 84.0 47 83.0
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 3.6e-15 84.0 47 85.1
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 4.7e-15 83.6 47 83.0
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 4.7e-15 83.6 47 83.0
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 4.7e-15 83.6 47 83.0
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 4.7e-15 83.6 47 83.0
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 4.7e-15 83.6 47 80.9
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 4.7e-15 83.6 47 85.1
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 4.7e-15 83.6 47 83.0
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 4.7e-15 83.6 47 83.0
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 6.2e-15 83.2 47 83.0
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 6.2e-15 83.2 47 85.1
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 6.2e-15 83.2 47 83.0
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 83.0
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 83.0
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 85.1
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 83.0
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 83.0
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 83.0
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 83.0
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 83.0
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 80.9
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 83.0
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 87.2
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 80.9
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 8.0e-15 82.8 47 83.0
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 1.0e-14 82.4 47 83.0
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 1.0e-14 82.4 47 83.0
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.0e-14 82.4 47 83.0
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 1.0e-14 82.4 47 83.0
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 1.4e-14 82.0 47 87.2
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 1.4e-14 82.0 47 83.0
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 1.4e-14 82.0 47 78.7
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 1.4e-14 82.0 47 83.0
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 1.4e-14 82.0 47 78.7
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 1.8e-14 81.6 47 80.9
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 1.8e-14 81.6 47 80.9
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 2.3e-14 81.3 47 80.9
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 2.3e-14 81.3 47 85.1
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 2.3e-14 81.3 47 85.1
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 2.3e-14 81.3 47 78.7
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 2.3e-14 81.3 47 80.9
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 2.3e-14 81.3 47 80.9
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 2.3e-14 81.3 47 80.9
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 2.3e-14 81.3 47 78.7
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 2.3e-14 81.3 47 80.9
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 2.3e-14 81.3 47 80.9
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 2.3e-14 81.3 47 80.9
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 3.1e-14 80.9 47 85.1
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 3.1e-14 80.9 47 78.7
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 3.1e-14 80.9 47 76.6
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 3.1e-14 80.9 47 80.9
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 3.1e-14 80.9 47 78.7
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 4.0e-14 80.5 47 78.7
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 4.0e-14 80.5 47 80.9
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 4.0e-14 80.5 47 80.9
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.0e-14 80.5 47 80.9
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.0e-14 80.5 47 80.9
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.0e-14 80.5 47 80.9
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 4.0e-14 80.5 47 80.9
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 4.0e-14 80.5 47 80.9
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 4.0e-14 80.5 47 78.7
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 4.0e-14 80.5 47 80.9
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 5.2e-14 80.1 47 78.7
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 5.2e-14 80.1 47 76.6
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 6.8e-14 79.7 47 74.5
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 6.8e-14 79.7 47 76.6
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 6.8e-14 79.7 47 76.6
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 6.8e-14 79.7 47 80.9
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 6.8e-14 79.7 47 83.0
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 6.8e-14 79.7 47 78.7
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 8.9e-14 79.3 47 74.5
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 8.9e-14 79.3 47 78.7
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 8.9e-14 79.3 47 78.7
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 8.9e-14 79.3 47 78.7
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 1.2e-13 79.0 47 76.6
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 1.2e-13 79.0 47 76.6
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.2e-13 79.0 47 76.6
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.2e-13 79.0 47 76.6
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 1.2e-13 79.0 47 76.6
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 1.2e-13 79.0 47 76.6
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 1.2e-13 79.0 47 78.7
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 1.5e-13 78.6 47 74.5
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 2.0e-13 78.2 47 74.5
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 2.0e-13 78.2 47 74.5
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 2.6e-13 77.8 47 78.7
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 2.6e-13 77.8 47 74.5
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 3.4e-13 77.4 47 74.5
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 3.4e-13 77.4 47 74.5
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 3.4e-13 77.4 47 76.6
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 4.4e-13 77.0 47 72.3
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.7e-12 75.1 47 74.5
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 2.2e-12 74.7 43 81.4
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 2.4e-11 71.2 43 79.1
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 9.2e-11 69.3 67 59.7
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 3.3e-08 60.8 43 69.8
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 1.6e-07 58.5 46 65.2
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 8.1e-07 56.2 45 60.0


User provided reference genes

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