Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g30190 Coffea canephora HOM05D004276 ORTHO05D005126 1.3e-60 236.1 112 100.0
Solyc03g121130.3 Solanum lycopersicum HOM05D004276 ORTHO05D005126 1.8e-46 189.1 103 89.3
Sopen03g039960 Solanum pennellii HOM05D004276 ORTHO05D005126 1.8e-46 189.1 103 89.3
PGSC0003DMG402002606 Solanum tuberosum HOM05D004276 ORTHO05D005126 2.4e-46 188.7 103 88.3
MBI06_g29321_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 4.1e-46 188.0 103 87.4
Nitab4.5_0000305g0280 Nicotiana tabacum HOM05D004276 ORTHO05D005126 4.1e-46 188.0 103 88.3
Prupe.2G181300 Prunus persica HOM05D004276 ORTHO05D005126 4.1e-46 188.0 103 87.4
SEGI_17768 Sequoiadendron giganteum HOM05D004276 ORTHO05D005126 5.3e-46 187.6 103 87.4
Thecc.01G349900 Theobroma cacao HOM05D004276 ORTHO05D005126 5.3e-46 187.6 103 88.3
HPP92_002823 Vanilla planifolia HOM05D004276 ORTHO05D005126 1.2e-45 186.4 103 87.4
HPP92_002881 Vanilla planifolia HOM05D004276 ORTHO05D005126 1.2e-45 186.4 103 87.4
Duzib133G1515 Durio zibethinus HOM05D004276 ORTHO05D005126 1.5e-45 186.0 103 87.4
Lj9C594T5 Lonicera japonica HOM05D004276 ORTHO05D005126 1.5e-45 186.0 103 86.4
Aqoxy7G00185 Aquilegia oxysepala HOM05D004276 ORTHO05D005126 2.0e-45 185.7 103 85.4
Duzib138G1911 Durio zibethinus HOM05D004276 ORTHO05D005126 2.0e-45 185.7 103 87.4
Cc02_g38790 Coffea canephora HOM05D004276 ORTHO05D005126 2.6e-45 185.3 103 86.4
MD01G1073500 Malus domestica HOM05D004276 ORTHO05D005126 2.6e-45 185.3 103 88.3
Sc23g0002430 Simmondsia chinensis HOM05D004276 ORTHO05D005126 2.6e-45 185.3 103 85.4
Eucgr.E00082 Eucalyptus grandis HOM05D004276 ORTHO05D005126 3.4e-45 184.9 103 85.4
Ah.05g180030 Amaranthus hybridus HOM05D004276 ORTHO05D005126 4.5e-45 184.5 103 86.4
EL10Ac1g00335 Beta vulgaris HOM05D004276 ORTHO05D005126 4.5e-45 184.5 103 85.4
Manes.11G086700 Manihot esculenta HOM05D004276 ORTHO05D005126 4.5e-45 184.5 103 85.4
Rhsim01G0168500 Rhododendron simsii HOM05D004276 ORTHO05D005126 4.5e-45 184.5 103 86.4
Rhsim11G0144600 Rhododendron simsii HOM05D004276 ORTHO05D005126 4.5e-45 184.5 103 86.4
TAR374G1118 Trochodendron aralioides HOM05D004276 ORTHO05D005126 4.5e-45 184.5 103 86.4
TAR375G0154 Trochodendron aralioides HOM05D004276 ORTHO05D005126 4.5e-45 184.5 103 86.4
DCAR_017055 Daucus carota HOM05D004276 ORTHO05D005126 5.9e-45 184.1 103 84.5
ECA234G2670 Erigeron canadensis HOM05D004276 ORTHO05D005126 5.9e-45 184.1 103 85.4
Gohir.A11G093300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 5.9e-45 184.1 103 86.4
Gohir.D11G098300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 5.9e-45 184.1 103 86.4
HanXRQChr17g0562231 Helianthus annuus HOM05D004276 ORTHO05D005126 5.9e-45 184.1 103 85.4
Gorai.007G104500 Gossypium raimondii HOM05D004276 ORTHO05D005126 7.6e-45 183.7 103 85.4
Nn5g30298 Nelumbo nucifera HOM05D004276 ORTHO05D005126 7.6e-45 183.7 103 85.4
THA.LOC104802050 Tarenaya hassleriana HOM05D004276 ORTHO05D005126 7.6e-45 183.7 103 85.4
TWI59G1141 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 7.6e-45 183.7 103 83.5
PSO302G0143 Papaver somniferum HOM05D004276 ORTHO05D005126 1.0e-44 183.3 103 84.5
PSO384G3706 Papaver somniferum HOM05D004276 ORTHO05D005126 1.0e-44 183.3 103 84.5
Potri.002G166200 Populus trichocarpa HOM05D004276 ORTHO05D005126 1.0e-44 183.3 103 83.5
Potri.014G092600 Populus trichocarpa HOM05D004276 ORTHO05D005126 1.0e-44 183.3 103 84.5
TWI14G0490 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 1.0e-44 183.3 103 85.4
Atru.chr5.606 Acer truncatum HOM05D004276 ORTHO05D005126 1.3e-44 183.0 103 84.5
FvH4_7g15670 Fragaria vesca HOM05D004276 ORTHO05D005126 1.3e-44 183.0 103 85.4
FAN06G0043 Fragaria x ananassa HOM05D004276 ORTHO05D005126 1.3e-44 183.0 103 85.4
PSO135G0697 Papaver somniferum HOM05D004276 ORTHO05D005126 1.3e-44 183.0 103 83.5
PSO210G0614 Papaver somniferum HOM05D004276 ORTHO05D005126 1.3e-44 183.0 103 83.5
Actinidia20176 Actinidia chinensis HOM05D004276 ORTHO05D005126 1.7e-44 182.6 103 85.4
Ciclev10022345m.g Citrus clementina HOM05D004276 ORTHO05D005126 1.7e-44 182.6 103 84.5
HPP92_002892 Vanilla planifolia HOM05D004276 ORTHO05D005126 1.7e-44 182.6 103 86.4
MSTRG.17308 Avicennia marina HOM05D004276 ORTHO05D005126 2.2e-44 182.2 103 84.5
CSS0045220 Camellia sinensis var. sinensis HOM05D004276 ORTHO05D005126 2.2e-44 182.2 101 86.1
RcHm_v2.0_Chr1g0358391 Rosa chinensis HOM05D004276 ORTHO05D005126 2.2e-44 182.2 103 85.4
CsaV3_3G040290 Cucumis sativus L. HOM05D004276 ORTHO05D005126 2.9e-44 181.8 103 84.5
MELO3C009766.2 Cucumis melo HOM05D004276 ORTHO05D005126 3.8e-44 181.4 103 83.5
Sed0018576 Sechium edule HOM05D004276 ORTHO05D005126 3.8e-44 181.4 103 83.5
AUR62022636 Chenopodium quinoa HOM05D004276 ORTHO05D005126 5.0e-44 181.0 103 83.5
Migut.B01814 Erythranthe guttata HOM05D004276 ORTHO05D005126 8.5e-44 180.3 103 82.5
Migut.N01579 Erythranthe guttata HOM05D004276 ORTHO05D005126 8.5e-44 180.3 103 82.5
CBR_g20329 Chara braunii HOM05D004276 ORTHO05D005126 1.1e-43 179.9 103 82.5
Os06g0158600 Oryza sativa ssp. japonica HOM05D004276 ORTHO05D005126 1.1e-43 179.9 103 84.5
PGR031G2222 Punica granatum HOM05D004276 ORTHO05D005126 1.1e-43 179.9 103 82.5
Zm00001eb376300 Zea mays HOM05D004276 ORTHO05D005126 1.1e-43 179.9 103 84.5
CANSAT78G1628 Cannabis sativa HOM05D004276 ORTHO05D005126 1.4e-43 179.5 103 82.5
Lj1g0009566 Lotus japonicus HOM05D004276 ORTHO05D005126 1.4e-43 179.5 103 83.5
Lj3g0009308 Lotus japonicus HOM05D004276 ORTHO05D005126 1.4e-43 179.5 103 83.5
Mapoly0007s0029 Marchantia polymorpha HOM05D004276 ORTHO05D005126 1.9e-43 179.1 103 80.6
unitig_736.g22824 Utricularia gibba HOM05D004276 ORTHO05D005126 1.9e-43 179.1 103 81.6
Zm00001eb376330 Zea mays HOM05D004276 ORTHO05D005126 1.9e-43 179.1 101 85.1
GSVIVG01026915001 Vitis vinifera HOM05D004276 ORTHO05D005126 2.5e-43 178.7 103 84.5
GSVIVG01027024001 Vitis vinifera HOM05D004276 ORTHO05D005126 2.5e-43 178.7 103 84.5
Zm00001eb376230 Zea mays HOM05D004276 ORTHO05D005126 2.5e-43 178.7 103 84.5
Thhalv10001643m.g Eutrema salsugineum HOM05D004276 ORTHO05D005126 3.2e-43 178.3 103 80.6
CiPaw.01G069700 Carya illinoinensis HOM05D004276 ORTHO05D005126 4.2e-43 177.9 103 82.5
Peaxi162Scf01254g00021 Petunia axillaris HOM05D004276 ORTHO05D005126 5.5e-43 177.6 98 87.8
Lalb_Chr04g0261801 Lupinus albus HOM05D004276 ORTHO05D005126 7.2e-43 177.2 103 81.6
QL04p058903 Quercus lobata HOM05D004276 ORTHO05D005126 7.2e-43 177.2 102 82.4
AL1G39200 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 1.2e-42 176.4 124 70.2
Glyma.12G191100 Glycine max HOM05D004276 ORTHO05D005126 1.2e-42 176.4 103 82.5
Glyma.13G310600 Glycine max HOM05D004276 ORTHO05D005126 1.2e-42 176.4 103 82.5
Phvul.005G117100 Phaseolus vulgaris HOM05D004276 ORTHO05D005126 1.6e-42 176.0 103 80.6
Carub.0004s2893 Capsella rubella HOM05D004276 ORTHO05D005126 2.1e-42 175.6 122 70.5
Pp3c7_15560 Physcomitrium patens HOM05D004276 ORTHO05D005126 2.1e-42 175.6 101 82.2
FAN01G1870 Fragaria x ananassa HOM05D004276 ORTHO05D005126 3.6e-42 174.9 98 86.7
FAN10G0892 Fragaria x ananassa HOM05D004276 ORTHO05D005126 3.6e-42 174.9 98 86.7
Sabra14G0067200 Salix brachista HOM05D004276 ORTHO05D005126 3.6e-42 174.9 114 76.3
Cpa.g.sc184.11 Carica papaya HOM05D004276 ORTHO05D005126 6.1e-42 174.1 98 84.7
Pp3c11_12810 Physcomitrium patens HOM05D004276 ORTHO05D005126 6.1e-42 174.1 101 81.2
Nitab4.5_0004748g0010 Nicotiana tabacum HOM05D004276 ORTHO05D005126 1.0e-41 173.3 95 88.4
AT2G46230 Arabidopsis thaliana HOM05D004276 ORTHO05D005126 1.3e-41 172.9 124 68.5
ClCG10G016120 Citrullus lanatus HOM05D004276 ORTHO05D005126 1.3e-41 172.9 98 82.7
Oeu004920.1 Olea europaea HOM05D004276 ORTHO05D005126 1.3e-41 172.9 125 71.2
AagrBONN_evm.TU.Sc2ySwM_368.2613 Anthoceros agrestis HOM05D004276 ORTHO05D005126 2.3e-41 172.2 103 77.7
AUR62004429 Chenopodium quinoa HOM05D004276 ORTHO05D005126 3.0e-41 171.8 102 79.4
CARHR025440 Cardamine hirsuta HOM05D004276 ORTHO05D005126 8.7e-41 170.2 124 67.7
Ca_25855_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 8.7e-41 170.2 98 82.7
Psat3g005280 Pisum sativum HOM05D004276 ORTHO05D005126 8.7e-41 170.2 103 80.6
Cfa003820 Carpinus fangiana HOM05D004276 ORTHO05D005126 1.1e-40 169.9 98 82.7
VMungo1080G0287 Vigna mungo HOM05D004276 ORTHO05D005126 1.1e-40 169.9 98 81.6
AL4G45500 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 1.5e-40 169.5 121 68.6
SGA_v2.0_scaffold95G28798 Striga asiatica HOM05D004276 ORTHO05D005126 1.5e-40 169.5 118 72.9
arahy.Tifrunner.gnm1.ann1.BP50A3 Arachis hypogaea HOM05D004276 ORTHO05D005126 1.9e-40 169.1 103 78.6
arahy.Tifrunner.gnm1.ann1.K2BJ17 Arachis hypogaea HOM05D004276 ORTHO05D005126 1.9e-40 169.1 103 78.6
Ca_09481_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 1.9e-40 169.1 98 81.6
BcaC02g12509 Brassica carinata HOM05D004276 ORTHO05D005126 2.5e-40 168.7 103 76.7
Medtr6g086290 Medicago truncatula HOM05D004276 ORTHO05D005126 3.3e-40 168.3 103 77.7
Medtr7g116720 Medicago truncatula HOM05D004276 ORTHO05D005126 3.3e-40 168.3 103 77.7
TPR.G4704 Trifolium pratense HOM05D004276 ORTHO05D005126 3.3e-40 168.3 103 78.6
Sp4g28280 Schrenkiella parvula HOM05D004276 ORTHO05D005126 5.7e-40 167.5 122 66.4
SMO117G0002 Selaginella moellendorffii HOM05D004276 ORTHO05D005126 5.7e-40 167.5 98 79.6
Aa31LG1G27620 Aethionema arabicum HOM05D004276 ORTHO05D005126 7.4e-40 167.2 98 79.6
BcaC02g12702 Brassica carinata HOM05D004276 ORTHO05D005126 9.7e-40 166.8 124 66.1
FAN10G4166 Fragaria x ananassa HOM05D004276 ORTHO05D005126 9.7e-40 166.8 108 78.7
Cre16.g679450 Chlamydomonas reinhardtii HOM05D004276 ORTHO05D005126 6.3e-39 164.1 100 74.0
MBI07_g03903_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 8.2e-39 163.7 98 80.6
MCO11G412 Micromonas commoda HOM05D004276 ORTHO05D005126 2.4e-38 162.2 100 75.0
arahy.Tifrunner.gnm1.ann1.4FI6MM Arachis hypogaea HOM05D004276 ORTHO05D005126 3.1e-38 161.8 98 78.6
arahy.Tifrunner.gnm1.ann1.X3APAR Arachis hypogaea HOM05D004276 ORTHO05D005126 3.1e-38 161.8 98 78.6
BcaC02g07027 Brassica carinata HOM05D004276 ORTHO05D005126 5.3e-38 161.0 97 77.3
A04p34320 Brassica napus HOM05D004276 ORTHO05D005126 5.3e-38 161.0 97 77.3
A05p01570 Brassica napus HOM05D004276 ORTHO05D005126 5.3e-38 161.0 97 77.3
C04p01790 Brassica napus HOM05D004276 ORTHO05D005126 5.3e-38 161.0 97 77.3
C04p72140 Brassica napus HOM05D004276 ORTHO05D005126 5.3e-38 161.0 97 77.3
BraA04t18893Z Brassica rapa HOM05D004276 ORTHO05D005126 5.3e-38 161.0 97 77.3
BraA05t19152Z Brassica rapa HOM05D004276 ORTHO05D005126 5.3e-38 161.0 97 77.3
FAN06G3034 Fragaria x ananassa HOM05D004276 ORTHO05D005126 1.5e-37 159.5 100 78.0
BcaB06g29435 Brassica carinata HOM05D004276 ORTHO05D005126 2.0e-37 159.1 96 77.1
SalBow3G3563 Salvia bowleyana HOM05D004276 ORTHO05D005126 4.5e-37 157.9 123 65.9
Sabra02G0145400 Salix brachista HOM05D004276 ORTHO05D005126 1.0e-36 156.8 112 67.9
SalBow1G3478 Salvia bowleyana HOM05D004276 ORTHO05D005126 3.8e-36 154.8 98 76.5
Zm00001eb376200 Zea mays HOM05D004276 ORTHO05D005126 5.0e-36 154.5 94 80.9
Zm00001eb376270 Zea mays HOM05D004276 ORTHO05D005126 5.0e-36 154.5 94 80.9
Haze_15633 Corylus avellana HOM05D004276 ORTHO05D005126 4.2e-35 151.4 135 60.0
QL06p021685 Quercus lobata HOM05D004276 ORTHO05D005126 2.1e-34 149.1 139 58.3
PRCOL_00001531 Prasinoderma coloniale HOM05D004276 ORTHO05D005126 2.2e-31 139.0 104 65.4
Glyma.03G254200 Glycine max HOM05D004276 ORTHO05D005126 6.3e-31 137.5 83 79.5
Glyma.19G251700 Glycine max HOM05D004276 ORTHO05D005126 4.1e-30 134.8 79 79.7
MBI02_g45291_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 3.4e-29 131.7 79 77.2
AT1G26530 Arabidopsis thaliana HOM05D004276 ORTHO05D005126 2.9e-28 128.6 79 74.7
DCAR_005368 Daucus carota HOM05D004276 ORTHO05D005126 8.5e-28 127.1 74 78.4
CAN.G1143.25 Capsicum annuum HOM05D004276 ORTHO05D005126 2.5e-27 125.6 83 73.5
Sed0023585 Sechium edule HOM05D004276 ORTHO05D005126 5.5e-27 124.4 93 66.7
Lsat_1_v5_gn_4_34121 Lactuca sativa HOM05D004276 ORTHO05D005126 7.2e-27 124.0 73 82.2
ATR0585G106 Amborella trichopoda HOM05D004276 ORTHO05D005126 1.2e-26 123.2 73 83.6
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 3.6e-26 121.7 72 83.3
Haze_27571 Corylus avellana HOM05D004276 ORTHO05D005126 4.7e-26 121.3 92 62.0
CDE05G0403 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 1.4e-25 119.8 72 80.6
CDE11G0794 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 1.8e-25 119.4 58 93.1
Dinv32536 Davidia involucrata HOM05D004276 ORTHO05D005126 1.8e-22 109.4 53 94.3
Hund16683 Selenicereus undatus HOM05D004276 ORTHO05D005126 1.8e-22 109.4 53 94.3
COL.COLO4_06361 Corchorus olitorius HOM05D004276 ORTHO05D005126 4.1e-22 108.2 53 94.3
COL.COLO4_16625 Corchorus olitorius HOM05D005906 ORTHO05D007359 9.1e-22 107.1 54 88.9
MBI18_g19490_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 5.0e-20 101.3 66 72.7
Oeu048599.1 Olea europaea HOM05D004276 ORTHO05D005126 2.6e-16 89.0 62 72.6
SHI12502 Sapria himalayana HOM05D004276 ORTHO05D005126 2.6e-16 89.0 113 50.4
Actinidia10088 Actinidia chinensis HOM05D004276 ORTHO05D005126 1.1e-14 83.6 56 73.2
CDE11G0451 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 2.4e-14 82.4 51 78.4
Lsat_1_v5_gn_2_67120 Lactuca sativa HOM05D004276 ORTHO05D005126 7.0e-14 80.9 59 66.1
Actinidia10089 Actinidia chinensis HOM05D004276 ORTHO05D005126 7.2e-11 70.9 35 94.3
SHI29225 Sapria himalayana HOM05D004276 ORTHO05D005126 1.4e-09 66.6 52 65.4
Hma1.2p1_0248F.1_g102040 Hydrangea macrophylla HOM05D001996 ORTHO05D002072 9.8e-08 60.5 29 79.3


User provided reference genes

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