Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 1.1e-173 613.2 318 100.0
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 9.5e-149 530.4 281 98.9
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 2.0e-127 459.5 280 84.3
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 4.7e-124 448.4 280 82.9
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.2e-122 443.7 281 81.1
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 2.0e-122 443.0 281 81.1
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 7.5e-122 441.0 281 80.4
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.3e-121 440.3 280 80.7
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 2.2e-121 439.5 280 82.1
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 2.9e-121 439.1 280 81.4
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 4.9e-121 438.3 281 81.5
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 6.4e-121 438.0 281 80.8
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 4.1e-120 435.3 281 80.8
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 5.4e-120 434.9 281 81.1
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 9.2e-120 434.1 280 80.4
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.2e-119 433.7 281 78.3
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.2e-119 433.7 281 80.1
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 3.5e-119 432.2 281 79.7
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.5e-119 432.2 281 80.1
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 6.0e-119 431.4 281 79.0
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 7.8e-119 431.0 294 77.6
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 1.3e-118 430.3 281 79.4
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.0e-118 429.1 281 79.4
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 5.1e-118 428.3 269 81.0
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.9e-117 426.4 281 77.9
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 4.3e-117 425.2 281 77.9
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.1e-116 422.9 280 77.1
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 3.6e-116 422.2 281 77.2
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.8e-115 419.9 281 77.2
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 3.1e-115 419.1 281 76.5
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 6.8e-115 417.9 287 76.3
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 8.9e-115 417.5 280 78.2
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 8.9e-115 417.5 295 74.2
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 1.2e-114 417.2 281 77.6
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.2e-114 417.2 281 75.8
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.5e-114 416.8 281 75.1
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 2.6e-114 416.0 281 77.6
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 2.6e-114 416.0 281 76.5
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 5.8e-114 414.8 281 76.5
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 5.8e-114 414.8 281 76.5
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 9.9e-114 414.1 281 76.9
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 9.9e-114 414.1 281 76.2
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 2.2e-113 412.9 282 75.9
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 3.8e-113 412.1 282 75.9
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 3.8e-113 412.1 281 75.1
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 4.9e-113 411.8 277 76.9
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.4e-112 410.2 280 76.1
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 3.2e-112 409.1 281 74.7
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 7.1e-112 407.9 280 75.0
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.2e-111 407.1 281 76.2
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.6e-111 406.8 274 74.5
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.6e-111 406.8 281 74.0
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.1e-111 406.4 280 74.6
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.0e-110 404.1 281 72.2
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.3e-110 403.7 281 72.6
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.3e-110 403.7 281 72.6
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 1.7e-110 403.3 274 74.1
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 2.3e-110 402.9 306 70.3
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 3.0e-110 402.5 281 72.6
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 3.9e-110 402.1 280 72.9
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.9e-110 402.1 281 73.0
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 8.7e-110 401.0 280 73.2
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.5e-109 400.2 279 72.4
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.9e-109 399.8 280 73.2
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 4.3e-109 398.7 281 72.2
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 4.3e-109 398.7 275 73.8
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 5.6e-109 398.3 281 71.9
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 5.6e-109 398.3 281 71.9
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 5.6e-109 398.3 281 71.9
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 5.6e-109 398.3 280 72.9
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 5.6e-109 398.3 280 72.5
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 9.6e-109 397.5 299 70.9
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 9.6e-109 397.5 278 73.0
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 9.6e-109 397.5 280 73.6
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 2.8e-108 396.0 281 71.5
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 4.7e-108 395.2 281 70.8
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 4.7e-108 395.2 279 72.8
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 8.1e-108 394.4 281 71.2
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 8.1e-108 394.4 279 71.7
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.1e-107 394.0 274 72.3
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 2.4e-107 392.9 280 73.6
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.4e-107 392.9 280 73.6
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 2.4e-107 392.9 279 72.8
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 5.2e-107 391.7 280 73.6
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 9.0e-107 391.0 281 70.5
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 9.0e-107 391.0 279 72.0
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 9.0e-107 391.0 279 72.0
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 9.0e-107 391.0 281 71.5
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 9.0e-107 391.0 279 71.7
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.2e-106 390.6 280 73.6
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.2e-106 390.6 280 73.6
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 1.5e-106 390.2 280 70.7
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.5e-106 390.2 274 71.5
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 2.0e-106 389.8 281 70.1
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.6e-106 389.4 280 71.4
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.6e-106 389.4 293 71.0
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 2.6e-106 389.4 280 72.9
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 7.6e-106 387.9 280 73.2
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 2.9e-105 386.0 279 71.3
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 2.9e-105 386.0 279 71.0
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 7.1e-104 381.3 281 69.4
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.6e-103 380.2 288 67.4
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.6e-103 380.2 288 67.4
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.6e-103 380.2 280 72.5
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 3.5e-103 379.0 303 66.3
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.1e-101 374.0 261 76.6
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 7.3e-101 371.3 274 70.1
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.1e-100 369.8 280 72.1
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 6.2e-100 368.2 274 69.0
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 3.1e-99 365.9 274 67.9
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 3.1e-99 365.9 247 76.9
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 2.6e-98 362.8 280 67.5
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 7.6e-98 361.3 280 71.1
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 4.9e-97 358.6 261 73.6
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.5e-95 352.4 230 76.1
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 8.7e-94 347.8 315 63.2
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.5e-93 347.1 280 65.4
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.1e-91 340.9 230 73.0
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 4.0e-91 339.0 273 64.5
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 3.4e-90 335.9 289 60.2
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.6e-87 327.0 278 61.5
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.8e-84 315.5 280 61.1
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.1e-83 312.8 242 69.4
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.2e-79 300.8 281 58.4
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 1.1e-77 294.3 281 56.2
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.2e-74 284.3 181 77.9
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.7e-68 263.8 285 52.6
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.7e-65 253.8 280 51.8
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.0e-62 244.6 244 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.3e-62 243.4 278 47.5
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 1.4e-59 234.2 279 43.4
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 4.1e-59 232.6 278 45.0
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 7.5e-45 185.3 274 38.0
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.8e-44 183.3 294 39.5
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 1.4e-30 137.9 80 82.5
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.5e-24 117.9 164 41.5
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.7e-17 94.4 108 53.7
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 2.3e-17 94.0 220 32.3
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 5.0e-17 92.8 201 36.3
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.4e-11 74.7 38 92.1
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.4e-11 73.9 40 85.0
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 5.4e-11 72.8 38 86.8
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 5.4e-11 72.8 38 86.8
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.4e-11 72.8 38 89.5
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 4.6e-10 69.7 341 24.3


User provided reference genes

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