Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 4.1e-125 451.4 233 100.0
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 1.2e-105 386.7 206 97.1
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 2.3e-104 382.5 204 97.5
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 1.2e-89 333.6 176 97.7
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 1.6e-68 263.5 211 65.9
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 2.6e-63 246.1 210 61.4
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 3.4e-63 245.7 208 62.5
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 4.5e-63 245.4 208 64.4
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 5.8e-63 245.0 208 63.0
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 1.3e-62 243.8 215 61.4
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 8.4e-62 241.1 207 61.4
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 1.9e-61 240.0 207 60.9
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 7.1e-61 238.0 206 60.7
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 2.3e-59 233.0 208 60.6
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 6.7e-59 231.5 219 58.0
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 8.7e-59 231.1 213 60.1
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 8.7e-59 231.1 208 58.2
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 1.1e-58 230.7 208 59.1
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 1.5e-58 230.3 215 57.7
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 9.6e-58 227.6 219 58.4
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 1.3e-57 227.3 206 58.7
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 1.6e-57 226.9 206 59.2
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 2.8e-57 226.1 220 56.4
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 4.8e-57 225.3 240 52.1
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 6.2e-57 224.9 247 51.4
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 8.1e-57 224.6 208 57.7
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 8.1e-57 224.6 240 52.1
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 3.1e-56 222.6 210 58.1
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 4.0e-56 222.2 221 56.6
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 4.0e-56 222.2 208 56.7
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 6.9e-56 221.5 209 56.5
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 9.0e-56 221.1 236 51.3
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 9.0e-56 221.1 207 58.5
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 1.2e-55 220.7 213 57.7
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 2.0e-55 219.9 219 53.4
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 2.0e-55 219.9 208 57.2
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 3.4e-55 219.2 229 53.3
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 5.8e-55 218.4 222 52.7
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 5.8e-55 218.4 217 55.8
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 7.6e-55 218.0 214 58.4
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 9.9e-55 217.6 208 57.7
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 1.3e-54 217.2 234 53.8
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.7e-54 216.9 216 54.2
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 2.2e-54 216.5 238 52.5
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.9e-54 216.1 207 55.6
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 6.4e-54 214.9 206 55.3
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 8.4e-54 214.5 239 50.6
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 1.9e-53 213.4 239 51.0
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 1.9e-53 213.4 209 55.0
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 5.5e-53 211.8 186 62.4
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 9.3e-53 211.1 207 56.0
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 1.2e-52 210.7 236 50.0
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 1.2e-52 210.7 216 52.3
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.2e-52 210.7 207 56.5
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 1.6e-52 210.3 241 49.0
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 4.6e-52 208.8 183 58.5
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 4.6e-52 208.8 239 49.8
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 6.0e-52 208.4 148 66.2
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 1.8e-51 206.8 233 51.1
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 1.8e-51 206.8 217 50.2
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 2.3e-51 206.5 213 52.6
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 2.3e-51 206.5 182 57.1
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 3.9e-51 205.7 249 47.4
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 5.1e-51 205.3 171 62.0
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 6.7e-51 204.9 241 49.4
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 6.7e-51 204.9 241 49.4
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 6.7e-51 204.9 241 49.4
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 8.7e-51 204.5 224 52.7
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 1.5e-50 203.8 236 49.6
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.3e-49 200.7 206 55.8
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 2.1e-49 199.9 187 58.3
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 2.1e-49 199.9 241 49.0
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 4.8e-49 198.7 166 58.4
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 8.2e-49 198.0 237 51.1
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 1.8e-48 196.8 174 59.8
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 2.4e-48 196.4 175 59.4
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 5.3e-48 195.3 248 49.2
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 2.6e-47 193.0 179 55.9
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 2.6e-47 193.0 236 50.8
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 5.8e-47 191.8 212 51.9
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 1.0e-46 191.0 174 58.0
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 1.3e-46 190.7 213 52.1
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 8.4e-46 188.0 164 55.5
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 1.1e-45 187.6 149 61.1
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 1.9e-45 186.8 149 61.1
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 1.9e-45 186.8 158 60.1
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 2.5e-45 186.4 206 51.5
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 4.2e-45 185.7 174 55.7
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 4.2e-45 185.7 261 42.5
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 9.3e-45 184.5 179 53.6
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 9.3e-45 184.5 129 68.2
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 1.2e-44 184.1 174 56.9
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 3.5e-44 182.6 210 50.5
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 6.0e-44 181.8 216 48.1
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 6.0e-44 181.8 186 55.4
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 6.0e-44 181.8 188 52.7
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 2.3e-43 179.9 191 51.3
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 5.1e-43 178.7 159 59.1
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 1.6e-41 173.7 273 41.8
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 2.8e-41 172.9 209 48.3
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 6.9e-40 168.3 230 46.1
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.0e-38 164.5 186 53.8
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.7e-38 163.7 139 58.3
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 6.5e-38 161.8 139 57.6
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 1.4e-37 160.6 197 46.2
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 1.9e-37 160.2 158 55.1
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 1.9e-37 160.2 185 46.5
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 4.2e-37 159.1 210 43.3
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 8.7e-35 151.4 150 52.0
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 1.1e-34 151.0 209 44.5
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 1.1e-34 151.0 209 44.5
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 2.5e-34 149.8 154 51.9
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 2.2e-33 146.7 211 39.8
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 6.3e-33 145.2 224 40.6
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 9.1e-32 141.4 151 49.7
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 5.0e-30 135.6 167 46.7
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.2e-28 131.0 164 43.3
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 4.7e-28 129.0 112 60.7
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 6.7e-27 125.2 158 45.6
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 5.3e-24 115.5 83 68.7
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 5.5e-21 105.5 233 33.9
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 6.3e-17 92.0 186 29.6
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 1.9e-13 80.5 142 36.6
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 1.7e-09 67.4 191 28.8
Psat1g035320 Pisum sativum HOM05D005401 ORTHO05D006582 2.2e-09 67.0 55 60.0
Psat7g085120 Pisum sativum HOM05D005401 ORTHO05D006582 8.2e-09 65.1 53 60.4
Psat4g107600 Pisum sativum HOM05D005401 ORTHO05D006582 1.2e-07 61.2 47 61.7


User provided reference genes

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