Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 1.2e-79 299.7 145 100.0
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 7.1e-43 177.6 85 97.6
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 5.6e-40 167.9 85 89.4
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.3e-40 167.5 85 87.1
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 7.3e-40 167.5 86 87.2
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 7.3e-40 167.5 85 87.1
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 7.3e-40 167.5 85 89.4
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 9.6e-40 167.2 86 86.0
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 9.6e-40 167.2 85 88.2
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.3e-39 166.8 86 87.2
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 1.3e-39 166.8 95 77.9
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.8e-39 165.6 85 88.2
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 2.8e-39 165.6 85 87.1
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 4.8e-39 164.9 85 88.2
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 4.8e-39 164.9 85 88.2
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 4.8e-39 164.9 85 88.2
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 4.8e-39 164.9 85 88.2
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 4.8e-39 164.9 85 88.2
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 4.8e-39 164.9 85 88.2
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 4.8e-39 164.9 85 87.1
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 6.2e-39 164.5 85 88.2
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 6.2e-39 164.5 85 85.9
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 6.2e-39 164.5 85 88.2
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.1e-38 163.7 85 87.1
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.1e-38 163.7 85 87.1
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.4e-38 163.3 85 87.1
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.4e-38 163.3 85 85.9
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.4e-38 163.3 85 87.1
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.4e-38 162.5 85 87.1
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.4e-38 162.5 85 87.1
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 2.4e-38 162.5 85 87.1
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 2.4e-38 162.5 85 84.7
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 3.1e-38 162.2 85 84.7
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 3.1e-38 162.2 85 83.5
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 4.0e-38 161.8 86 84.9
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 4.0e-38 161.8 85 87.1
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 4.0e-38 161.8 85 84.7
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 9.0e-38 160.6 85 84.7
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 9.0e-38 160.6 85 84.7
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.2e-37 160.2 85 87.1
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.2e-37 160.2 86 83.7
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.2e-37 160.2 85 84.7
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.2e-37 160.2 85 87.1
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.2e-37 160.2 85 87.1
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.2e-37 160.2 85 85.9
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 1.5e-37 159.8 85 84.7
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.5e-37 159.8 85 83.5
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 2.0e-37 159.5 85 83.5
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.0e-37 159.5 85 82.4
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.0e-37 159.5 85 82.4
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.0e-37 159.5 85 84.7
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 2.0e-37 159.5 85 82.4
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 2.6e-37 159.1 85 84.7
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 3.4e-37 158.7 99 73.7
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 5.8e-37 157.9 85 83.5
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 5.8e-37 157.9 85 84.7
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 5.8e-37 157.9 85 84.7
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 5.8e-37 157.9 85 84.7
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 5.8e-37 157.9 85 87.1
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 7.6e-37 157.5 85 83.5
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 7.6e-37 157.5 99 71.7
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 9.9e-37 157.1 85 83.5
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 9.9e-37 157.1 85 82.4
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 9.9e-37 157.1 85 85.9
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 9.9e-37 157.1 85 82.4
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.3e-36 156.8 85 84.7
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.3e-36 156.8 85 84.7
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 1.7e-36 156.4 85 83.5
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.2e-36 156.0 85 84.7
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.9e-36 155.6 85 83.5
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.9e-36 155.6 85 83.5
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.8e-36 155.2 85 84.7
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 3.8e-36 155.2 85 84.7
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 3.8e-36 155.2 85 84.7
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 4.9e-36 154.8 85 82.4
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 4.9e-36 154.8 85 83.5
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 6.4e-36 154.5 91 81.3
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 6.4e-36 154.5 85 82.4
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 8.4e-36 154.1 85 84.7
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 1.1e-35 153.7 89 83.1
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.1e-35 153.7 85 82.4
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 1.4e-35 153.3 86 82.6
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 1.9e-35 152.9 85 83.5
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 1.9e-35 152.9 85 83.5
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.9e-35 152.9 99 72.7
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.9e-35 152.9 99 72.7
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.9e-35 152.9 85 82.4
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 1.9e-35 152.9 85 83.5
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 2.4e-35 152.5 85 83.5
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 3.2e-35 152.1 85 82.4
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 3.2e-35 152.1 85 82.4
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 3.2e-35 152.1 85 83.5
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.2e-35 152.1 85 83.5
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.2e-35 152.1 85 83.5
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 3.2e-35 152.1 85 82.4
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 4.2e-35 151.8 87 81.6
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 5.4e-35 151.4 85 82.4
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 5.4e-35 151.4 85 82.4
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 5.4e-35 151.4 85 82.4
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 5.4e-35 151.4 85 82.4
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 5.4e-35 151.4 85 82.4
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.4e-35 151.4 85 81.2
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.4e-35 151.4 85 81.2
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.4e-35 151.4 85 81.2
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 9.3e-35 150.6 85 77.6
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 1.6e-34 149.8 85 82.4
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 1.6e-34 149.8 85 82.4
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.6e-34 149.8 85 75.3
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.6e-34 149.8 85 75.3
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 4.6e-34 148.3 87 80.5
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.0e-33 147.1 85 77.6
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.0e-33 147.1 85 77.6
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.0e-33 147.1 85 75.3
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.3e-33 146.0 85 80.0
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 2.3e-33 146.0 85 82.4
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 3.0e-33 145.6 85 74.1
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 5.1e-33 144.8 85 76.5
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 8.7e-33 144.1 85 78.8
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 1.9e-32 142.9 85 80.0
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 4.3e-32 141.7 83 78.3
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 9.6e-32 140.6 85 71.8
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 9.6e-32 140.6 130 56.2
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.3e-31 140.2 132 55.3
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 1.6e-31 139.8 86 79.1
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 1.6e-31 139.8 85 70.6
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.4e-30 136.7 85 77.6
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.4e-30 136.7 85 77.6
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 3.1e-30 135.6 99 64.6
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 6.9e-30 134.4 85 72.9
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 2.0e-29 132.9 92 73.9
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.9e-28 128.3 91 60.4
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 1.4e-27 126.7 85 72.9
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 3.2e-27 125.6 109 59.6
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 3.2e-27 125.6 68 85.3
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 2.1e-26 122.9 85 65.9
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.1e-26 122.9 85 68.2
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 2.1e-26 122.9 85 67.1
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.7e-26 122.5 85 64.7
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.3e-25 120.2 85 62.4
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 5.1e-25 118.2 63 84.1
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.4e-22 110.2 61 82.0
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.8e-22 109.8 85 58.8
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 4.0e-22 108.6 63 79.4
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 6.9e-22 107.8 86 58.1
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.3e-20 103.6 69 71.0
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 3.3e-16 89.0 119 45.4
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 2.4e-14 82.8 96 45.8
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 1.0e-12 77.4 82 48.8
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 2.7e-10 69.3 50 68.0
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.0e-09 65.9 60 58.3
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 3.0e-09 65.9 75 44.0
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 5.1e-09 65.1 31 87.1
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 8.8e-09 64.3 46 69.6
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 2.5e-08 62.8 57 56.1
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 3.3e-08 62.4 33 78.8


User provided reference genes

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