Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 3.1e-142 508.4 254 100.0
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 9.6e-112 407.1 260 80.0
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 1.6e-111 406.4 254 79.9
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 9.0e-110 400.6 255 78.4
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 2.0e-109 399.4 260 76.9
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 3.4e-109 398.7 253 76.7
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 7.6e-109 397.5 254 77.6
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 2.2e-108 396.0 255 78.4
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 5.0e-108 394.8 255 78.0
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 6.5e-108 394.4 262 77.9
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 1.9e-107 392.9 255 76.5
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 4.2e-107 391.7 250 77.2
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 4.2e-107 391.7 259 76.4
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 5.5e-107 391.3 234 80.8
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 5.5e-107 391.3 227 84.6
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 7.2e-107 391.0 233 81.1
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 7.2e-107 391.0 250 76.8
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 9.3e-107 390.6 259 76.4
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 1.6e-106 389.8 259 76.1
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 2.1e-106 389.4 257 76.7
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 2.1e-106 389.4 254 76.4
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 1.0e-105 387.1 229 83.0
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 1.3e-105 386.7 258 74.8
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.3e-105 386.0 253 78.3
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 5.1e-105 384.8 254 77.2
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 6.7e-105 384.4 238 79.4
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 8.7e-105 384.0 247 76.9
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 1.9e-104 382.9 256 75.8
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 4.3e-104 381.7 249 75.9
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 5.7e-104 381.3 235 79.1
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 5.7e-104 381.3 249 75.9
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 9.7e-104 380.6 227 81.1
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 9.7e-104 380.6 248 75.8
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 9.7e-104 380.6 260 75.0
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 1.3e-103 380.2 251 76.1
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.2e-103 379.4 259 75.7
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 2.2e-103 379.4 255 75.3
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 2.8e-103 379.0 254 75.2
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 2.8e-103 379.0 254 73.6
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 1.1e-102 377.1 265 72.1
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.4e-102 376.7 251 75.3
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.4e-102 375.9 253 74.7
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 3.1e-102 375.6 246 76.8
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 3.1e-102 375.6 272 71.7
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 6.9e-102 374.4 259 74.1
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 9.0e-102 374.0 251 74.5
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 1.2e-101 373.6 259 74.5
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 2.0e-101 372.9 249 73.1
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 3.4e-101 372.1 225 82.2
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 4.5e-101 371.7 253 73.1
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 4.5e-101 371.7 257 71.6
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 5.9e-101 371.3 249 75.5
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 5.9e-101 371.3 249 74.3
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 7.7e-101 370.9 259 74.1
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 1.0e-100 370.5 250 72.8
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 1.0e-100 370.5 249 73.1
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.3e-100 370.2 258 72.9
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.3e-100 370.2 253 73.9
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.4e-99 366.7 257 73.2
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 4.2e-99 365.2 285 67.4
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 5.5e-99 364.8 230 76.5
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 1.2e-98 363.6 253 71.9
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.6e-98 363.2 231 77.1
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 2.1e-98 362.8 251 70.9
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 2.1e-98 362.8 252 70.6
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 2.7e-98 362.5 254 72.0
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 4.6e-98 361.7 257 72.4
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 1.8e-97 359.8 248 73.4
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 6.7e-97 357.8 249 71.5
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 8.8e-97 357.5 257 71.2
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.5e-96 355.9 254 70.5
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 3.3e-96 355.5 253 72.3
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 3.3e-96 355.5 215 80.5
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 7.4e-96 354.4 257 69.6
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.3e-95 353.6 254 70.1
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 1.9e-91 339.7 243 70.8
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 4.2e-91 338.6 250 69.6
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 9.4e-91 337.4 251 68.9
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 1.6e-90 336.7 245 69.8
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 6.1e-90 334.7 207 80.2
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 6.7e-89 331.3 245 69.0
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 8.8e-89 330.9 245 69.0
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 4.4e-88 328.6 253 66.8
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 2.8e-87 325.9 252 65.9
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 3.7e-87 325.5 252 67.9
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 6.3e-87 324.7 231 68.8
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 6.3e-87 324.7 254 63.8
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 1.6e-85 320.1 253 65.6
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 2.6e-85 319.3 253 66.8
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 4.5e-85 318.5 254 66.9
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 1.7e-84 316.6 238 66.0
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 8.5e-84 314.3 254 65.4
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.2e-82 310.5 199 77.4
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 2.1e-82 309.7 239 65.7
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 2.7e-82 309.3 240 66.2
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 1.0e-81 307.4 240 66.2
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 1.5e-80 303.5 253 63.2
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 4.4e-80 302.0 250 64.0
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 1.0e-76 290.8 277 57.4
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 9.4e-75 284.3 162 83.3
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 1.4e-73 280.4 185 75.7
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 4.8e-71 271.9 171 78.9
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.4e-70 270.4 172 77.9
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 4.1e-70 268.9 171 79.5
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 7.0e-70 268.1 172 77.9
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 5.9e-69 265.0 164 77.4
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 6.5e-68 261.5 171 76.0
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 7.2e-67 258.1 250 56.0
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 3.7e-63 245.7 253 54.2
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 2.0e-61 240.0 232 55.2
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 4.3e-59 232.3 190 61.6
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 3.6e-58 229.2 169 71.6
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 9.2e-46 188.0 247 47.0
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 2.4e-38 163.3 103 75.7
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 1.4e-33 147.5 93 77.4
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 8.9e-33 144.8 211 44.5
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 8.9e-33 144.8 193 47.7
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 6.4e-31 138.7 88 76.1
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 1.6e-29 134.0 80 77.5
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 1.1e-27 127.9 78 76.9
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 1.6e-26 124.0 73 76.7
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 2.2e-23 113.6 90 60.0
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 3.8e-23 112.8 194 41.8
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 3.2e-22 109.8 145 48.3
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 7.8e-21 105.1 91 59.3
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 8.7e-20 101.7 58 81.0
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 3.4e-16 89.7 130 36.9
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 4.5e-16 89.4 57 73.7
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 3.8e-15 86.3 56 71.4
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.4e-14 84.3 233 32.2
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.6e-13 80.9 61 67.2
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 1.1e-11 74.7 51 68.6
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 2.5e-11 73.6 64 56.2
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 2.0e-08 63.9 59 62.7
C09p14660 Brassica napus HOM05D017738 ORTHO05D042708 3.8e-07 59.7 94 40.4
BolC9t54371H Brassica oleracea HOM05D017738 ORTHO05D042708 3.8e-07 59.7 94 40.4
GSVIVG01016925001 Vitis vinifera HOM05D000106 ORTHO05D000160 7.1e-06 55.5 43 58.1


User provided reference genes

Program Settings