Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g17200 Coffea canephora HOM05D000404 ORTHO05D024273 4.7e-34 147.1 67 100.0
Cc00_g17190 Coffea canephora HOM05D000404 ORTHO05D001765 3.1e-33 144.4 67 97.0
Cc00_g26290 Coffea canephora HOM05D000404 ORTHO05D024273 8.9e-33 142.9 67 95.5
MSTRG.4192 Avicennia marina HOM05D000404 ORTHO05D001765 1.7e-31 138.7 67 92.5
Ah.08g211260 Amaranthus hybridus HOM05D000404 ORTHO05D001765 1.1e-30 136.0 67 91.0
Duzib212G0590 Durio zibethinus HOM05D000404 ORTHO05D001765 2.4e-30 134.8 67 89.6
Peaxi162Scf00125g01022 Petunia axillaris HOM05D000404 ORTHO05D001765 3.2e-30 134.4 67 91.0
Migut.G00595 Erythranthe guttata HOM05D000404 ORTHO05D001765 5.4e-30 133.7 67 86.6
ECA233G1779 Erigeron canadensis HOM05D000404 ORTHO05D001765 7.1e-30 133.3 67 88.1
SalBow2G1245 Salvia bowleyana HOM05D000404 ORTHO05D001765 7.1e-30 133.3 67 88.1
Sopen09g034010 Solanum pennellii HOM05D000404 ORTHO05D001765 7.1e-30 133.3 67 89.6
EL10Ac3g06727 Beta vulgaris HOM05D000404 ORTHO05D001765 9.3e-30 132.9 67 89.6
CAN.G812.36 Capsicum annuum HOM05D000404 ORTHO05D001765 9.3e-30 132.9 67 89.6
COL.COLO4_16011 Corchorus olitorius HOM05D000404 ORTHO05D001765 9.3e-30 132.9 67 89.6
Eucgr.H02879 Eucalyptus grandis HOM05D000404 ORTHO05D001765 9.3e-30 132.9 67 89.6
Hund24862 Selenicereus undatus HOM05D000404 ORTHO05D001765 9.3e-30 132.9 67 89.6
Gohir.A08G181833 Gossypium hirsutum HOM05D000404 ORTHO05D001765 1.2e-29 132.5 67 88.1
Oeu023149.1 Olea europaea HOM05D000404 ORTHO05D001765 1.2e-29 132.5 67 89.6
HanXRQChr02g0059361 Helianthus annuus HOM05D000404 ORTHO05D001765 1.6e-29 132.1 67 88.1
DCAR_024303 Daucus carota HOM05D000404 ORTHO05D001765 2.1e-29 131.7 67 88.1
PGSC0003DMG400001549 Solanum tuberosum HOM05D000404 ORTHO05D001765 2.1e-29 131.7 67 89.6
Nitab4.5_0000451g0050 Nicotiana tabacum HOM05D000404 ORTHO05D001765 2.7e-29 131.3 67 88.1
AUR62019329 Chenopodium quinoa HOM05D000404 ORTHO05D001765 3.5e-29 131.0 67 88.1
AUR62000148 Chenopodium quinoa HOM05D000404 ORTHO05D001765 4.6e-29 130.6 67 88.1
Gohir.D10G161501 Gossypium hirsutum HOM05D000404 ORTHO05D001765 4.6e-29 130.6 67 86.6
Gorai.011G180900 Gossypium raimondii HOM05D000404 ORTHO05D001765 4.6e-29 130.6 67 86.6
Gorai.011G181000 Gossypium raimondii HOM05D000404 ORTHO05D001765 4.6e-29 130.6 67 86.6
TWI09G0036 Tripterygium wilfordii HOM05D000404 ORTHO05D001765 4.6e-29 130.6 67 85.1
Ciclev10004620m.g Citrus clementina HOM05D000404 ORTHO05D001765 6.0e-29 130.2 67 89.6
Nitab4.5_0000745g0030 Nicotiana tabacum HOM05D000404 ORTHO05D001765 7.8e-29 129.8 67 88.1
Sabra10G0043800 Salix brachista HOM05D000404 ORTHO05D001765 1.0e-28 129.4 67 88.1
Solyc09g091030.3 Solanum lycopersicum HOM05D000404 ORTHO05D001765 1.0e-28 129.4 67 88.1
Thecc.04G269700 Theobroma cacao HOM05D000404 ORTHO05D001765 1.0e-28 129.4 67 86.6
Ah.15g091290 Amaranthus hybridus HOM05D000404 ORTHO05D001765 1.3e-28 129.0 67 89.6
Potri.010G062900 Populus trichocarpa HOM05D000404 ORTHO05D001765 1.7e-28 128.6 67 86.6
PSO832G3287 Papaver somniferum HOM05D000404 ORTHO05D001765 2.3e-28 128.3 67 86.6
Gohir.D10G161266 Gossypium hirsutum HOM05D000404 ORTHO05D001765 3.0e-28 127.9 67 85.1
Gohir.D10G161401 Gossypium hirsutum HOM05D000404 ORTHO05D001765 3.0e-28 127.9 67 85.1
Gohir.D10G161700 Gossypium hirsutum HOM05D000404 ORTHO05D001765 3.0e-28 127.9 67 85.1
CiPaw.02G104300 Carya illinoinensis HOM05D000404 ORTHO05D001765 3.9e-28 127.5 67 89.6
Nitab4.5_0001769g0150 Nicotiana tabacum HOM05D000404 ORTHO05D001765 5.1e-28 127.1 67 85.1
Dinv29782 Davidia involucrata HOM05D000404 ORTHO05D001765 1.1e-27 125.9 67 88.1
Rhsim02G0049200 Rhododendron simsii HOM05D000404 ORTHO05D001765 1.1e-27 125.9 67 85.1
Cpa.g.sc59.40 Carica papaya HOM05D000404 ORTHO05D001765 1.5e-27 125.6 67 86.6
Hma1.2p1_0112F.1_g055000 Hydrangea macrophylla HOM05D000404 ORTHO05D001765 1.5e-27 125.6 67 85.1
Lsat_1_v5_gn_6_67781 Lactuca sativa HOM05D000404 ORTHO05D001765 1.5e-27 125.6 67 82.1
CiPaw.01G174900 Carya illinoinensis HOM05D000404 ORTHO05D001765 1.9e-27 125.2 67 86.6
MELO3C006362.2 Cucumis melo HOM05D000404 ORTHO05D001765 1.9e-27 125.2 67 85.1
CsaV3_3G011520 Cucumis sativus L. HOM05D000404 ORTHO05D001765 1.9e-27 125.2 67 85.1
vmacro15493 Vaccinium macrocarpon HOM05D000404 ORTHO05D001765 3.3e-27 124.4 67 85.1
TAR636G1252 Trochodendron aralioides HOM05D000404 ORTHO05D001765 4.3e-27 124.0 67 83.6
Dinv27136 Davidia involucrata HOM05D000404 ORTHO05D001765 5.6e-27 123.6 63 87.3
Sed0014728 Sechium edule HOM05D000404 ORTHO05D001765 5.6e-27 123.6 67 83.6
ClCG05G003840 Citrullus lanatus HOM05D000404 ORTHO05D001765 9.6e-27 122.9 67 82.1
Duzib151G0851 Durio zibethinus HOM05D000404 ORTHO05D001765 9.6e-27 122.9 67 82.1
PGR004G0832 Punica granatum HOM05D000404 ORTHO05D001765 9.6e-27 122.9 67 83.6
arahy.Tifrunner.gnm1.ann1.4Y2508 Arachis hypogaea HOM05D000404 ORTHO05D001765 1.3e-26 122.5 64 84.4
arahy.Tifrunner.gnm1.ann1.TP5BL7 Arachis hypogaea HOM05D000404 ORTHO05D001765 1.3e-26 122.5 64 84.4
BcaC01g03340 Brassica carinata HOM05D000404 ORTHO05D024273 1.3e-26 122.5 67 82.1
C03p53510 Brassica napus HOM05D000404 ORTHO05D001765 1.3e-26 122.5 67 82.1
BolC3t17611H Brassica oleracea HOM05D000404 ORTHO05D001765 1.3e-26 122.5 67 82.1
Thhalv10002460m.g Eutrema salsugineum HOM05D000404 ORTHO05D001765 1.3e-26 122.5 67 80.6
Manes.15G047700 Manihot esculenta HOM05D000404 ORTHO05D001765 1.3e-26 122.5 67 80.6
Medtr6g477780 Medicago truncatula HOM05D000404 ORTHO05D001765 1.3e-26 122.5 67 83.6
TWI53G0819 Tripterygium wilfordii HOM05D000404 ORTHO05D001765 1.3e-26 122.5 67 82.1
Lj2g0005479 Lotus japonicus HOM05D000404 ORTHO05D001765 1.6e-26 122.1 67 83.6
Lalb_Chr24g0398421 Lupinus albus HOM05D000404 ORTHO05D001765 1.6e-26 122.1 67 83.6
Aqoxy5G00092 Aquilegia oxysepala HOM05D000404 ORTHO05D001765 2.1e-26 121.7 67 82.1
CSS0003801 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D001765 2.1e-26 121.7 67 82.1
CSS0043627 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D001765 2.1e-26 121.7 67 82.1
Glyma.09G168300 Glycine max HOM05D000404 ORTHO05D001765 2.1e-26 121.7 67 82.1
Glyma.16G217900 Glycine max HOM05D000404 ORTHO05D001765 2.1e-26 121.7 67 82.1
Sc19g0005720 Simmondsia chinensis HOM05D000404 ORTHO05D001765 2.1e-26 121.7 67 82.1
CANSAT78G2044 Cannabis sativa HOM05D000404 ORTHO05D001765 2.8e-26 121.3 67 80.6
FvH4_4g05230 Fragaria vesca HOM05D000404 ORTHO05D001765 2.8e-26 121.3 67 82.1
FAN12G4205 Fragaria x ananassa HOM05D000404 ORTHO05D001765 2.8e-26 121.3 67 82.1
FAN17G0810 Fragaria x ananassa HOM05D000404 ORTHO05D001765 2.8e-26 121.3 67 82.1
Gohir.D09G059200 Gossypium hirsutum HOM05D000404 ORTHO05D001765 2.8e-26 121.3 65 86.2
Gorai.006G073600 Gossypium raimondii HOM05D000404 ORTHO05D001765 2.8e-26 121.3 65 86.2
Sed0027694 Sechium edule HOM05D000404 ORTHO05D001765 2.8e-26 121.3 67 83.6
Gohir.A09G060000 Gossypium hirsutum HOM05D000404 ORTHO05D001765 3.6e-26 120.9 65 86.2
Hma1.2p1_0144F.1_g065110 Hydrangea macrophylla HOM05D000404 ORTHO05D001765 3.6e-26 120.9 67 85.1
Aa31LG9G4140 Aethionema arabicum HOM05D000404 ORTHO05D001765 4.8e-26 120.6 67 79.1
AL3G39630 Arabidopsis lyrata HOM05D000404 ORTHO05D001765 6.2e-26 120.2 67 79.1
A03p43530 Brassica napus HOM05D000404 ORTHO05D001765 6.2e-26 120.2 67 79.1
Carub.0003s2460 Capsella rubella HOM05D000404 ORTHO05D001765 6.2e-26 120.2 67 79.1
Lalb_Chr22g0353731 Lupinus albus HOM05D000404 ORTHO05D001765 6.2e-26 120.2 67 80.6
Ca_23681_v3 Cicer arietinum L. HOM05D000404 ORTHO05D001765 8.1e-26 119.8 67 80.6
Ca_30826_v3 Cicer arietinum L. HOM05D000404 ORTHO05D001765 8.1e-26 119.8 67 80.6
Psat0s398g0040 Pisum sativum HOM05D000404 ORTHO05D001765 1.4e-25 119.0 67 82.1
BraA03t13491Z Brassica rapa HOM05D000404 ORTHO05D001765 2.4e-25 118.2 67 79.1
FAN22G2386 Fragaria x ananassa HOM05D000404 ORTHO05D001765 2.4e-25 118.2 67 80.6
Phvul.004G143600 Phaseolus vulgaris HOM05D000404 ORTHO05D001765 2.4e-25 118.2 67 80.6
Sp3g22040 Schrenkiella parvula HOM05D000404 ORTHO05D001765 2.4e-25 118.2 67 79.1
AT3G23920 Arabidopsis thaliana HOM05D000404 ORTHO05D001765 3.1e-25 117.9 67 80.6
VMungo0464G1150 Vigna mungo HOM05D000404 ORTHO05D001765 4.0e-25 117.5 67 80.6
RcHm_v2.0_Chr4g0396151 Rosa chinensis HOM05D000404 ORTHO05D001765 5.3e-25 117.1 67 80.6
Peaxi162Scf00164g00116 Petunia axillaris HOM05D000404 ORTHO05D001765 9.0e-25 116.3 67 82.1
CSS0027311 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D001765 1.2e-24 115.9 68 80.9
Nn1g03038 Nelumbo nucifera HOM05D000404 ORTHO05D001765 1.2e-24 115.9 67 79.1
BcaB03g14596 Brassica carinata HOM05D000404 ORTHO05D001765 1.5e-24 115.5 67 76.1
CSS0047759 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D001765 1.5e-24 115.5 68 80.9
Atru.chr4.1867 Acer truncatum HOM05D000404 ORTHO05D001765 3.4e-24 114.4 67 79.1
HanXRQChr01g0022561 Helianthus annuus HOM05D000404 ORTHO05D001765 3.4e-24 114.4 65 78.5
MD13G1226400 Malus domestica HOM05D000404 ORTHO05D001765 3.4e-24 114.4 67 80.6
vmacro00529 Vaccinium macrocarpon HOM05D000404 ORTHO05D001765 4.5e-24 114.0 67 79.1
BcaC06g35671 Brassica carinata HOM05D000404 ORTHO05D001765 9.9e-24 112.8 67 77.6
C07p12240 Brassica napus HOM05D000404 ORTHO05D001765 9.9e-24 112.8 67 77.6
BolC7t41691H Brassica oleracea HOM05D000404 ORTHO05D001765 9.9e-24 112.8 67 77.6
BcaB06g26607 Brassica carinata HOM05D000404 ORTHO05D001765 1.3e-23 112.5 67 77.6
A07p08090 Brassica napus HOM05D000404 ORTHO05D001765 1.3e-23 112.5 67 77.6
BraA07t28594Z Brassica rapa HOM05D000404 ORTHO05D001765 1.3e-23 112.5 67 77.6
Cfa014834 Carpinus fangiana HOM05D000404 ORTHO05D001765 1.3e-23 112.5 67 77.6
TAR365G1221 Trochodendron aralioides HOM05D000404 ORTHO05D001765 1.3e-23 112.5 67 77.6
CANSAT78G2061 Cannabis sativa HOM05D000404 ORTHO05D001765 1.7e-23 112.1 67 74.6
Manes.03G155800 Manihot esculenta HOM05D000404 ORTHO05D001765 1.7e-23 112.1 64 78.1
Actinidia35931 Actinidia chinensis HOM05D000404 ORTHO05D001765 2.2e-23 111.7 67 82.1
CARHR100350 Cardamine hirsuta HOM05D000404 ORTHO05D001765 2.2e-23 111.7 67 76.1
QL06p022124 Quercus lobata HOM05D000404 ORTHO05D001765 2.2e-23 111.7 65 76.9
Haze_11512 Corylus avellana HOM05D000404 ORTHO05D001765 2.9e-23 111.3 67 76.1
Haze_11518 Corylus avellana HOM05D000404 ORTHO05D001765 2.9e-23 111.3 67 76.1
MD16G1231500 Malus domestica HOM05D000404 ORTHO05D001765 2.9e-23 111.3 67 79.1
Potri.008G174100 Populus trichocarpa HOM05D000404 ORTHO05D001765 2.9e-23 111.3 67 77.6
AUR62035895 Chenopodium quinoa HOM05D000404 ORTHO05D001765 6.4e-23 110.2 67 77.6
Nn3g19833 Nelumbo nucifera HOM05D000404 ORTHO05D001765 1.1e-22 109.4 64 78.1
Rhsim09G0044200 Rhododendron simsii HOM05D000404 ORTHO05D001765 1.9e-22 108.6 67 79.1
AUR62035346 Chenopodium quinoa HOM05D000404 ORTHO05D001765 2.4e-22 108.2 67 73.1
Prupe.1G053800 Prunus persica HOM05D000404 ORTHO05D001765 4.2e-22 107.5 64 79.7
CDE02G1349 Ceratophyllum demersum HOM05D000404 ORTHO05D001765 1.6e-21 105.5 66 71.2
MBI07_g14444_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 1.8e-20 102.1 66 71.2
Sabra08G0132800 Salix brachista HOM05D000404 ORTHO05D001765 2.3e-20 101.7 66 74.2
BcaB04g17770 Brassica carinata HOM05D000404 ORTHO05D094454 3.9e-20 100.9 64 70.3
ATR0723G058 Amborella trichopoda HOM05D000404 ORTHO05D001765 5.1e-20 100.5 66 68.2
unitig_736.g22482 Utricularia gibba HOM05D000404 ORTHO05D009097 8.7e-20 99.8 52 80.8
TPR.G16307 Trifolium pratense HOM05D000404 ORTHO05D001765 4.3e-19 97.4 55 81.8
unitig_899.g14856 Utricularia gibba HOM05D000404 ORTHO05D001765 7.4e-19 96.7 68 69.1
Lj3C636T2 Lonicera japonica HOM05D000404 ORTHO05D001765 1.6e-18 95.5 51 86.3
SEGI_28604 Sequoiadendron giganteum HOM05D000404 ORTHO05D001765 1.4e-17 92.4 66 69.7
Lj6A639T43 Lonicera japonica HOM05D000404 ORTHO05D001765 3.1e-17 91.3 67 71.6
Zm00001eb003440 Zea mays HOM05D000404 ORTHO05D001765 3.1e-17 91.3 67 67.2
SGA_v2.0_scaffold86G26844 Striga asiatica HOM05D000404 ORTHO05D001765 6.9e-17 90.1 67 70.1
THA.LOC104821625 Tarenaya hassleriana HOM05D000404 ORTHO05D001765 1.2e-16 89.4 73 61.6
Os03g0141200 Oryza sativa ssp. japonica HOM05D000404 ORTHO05D001765 6.4e-15 83.6 67 62.7
CDE08G1248 Ceratophyllum demersum HOM05D000404 ORTHO05D001765 1.4e-14 82.4 58 62.1
Hma1.2p1_0144F.1_g065090 Hydrangea macrophylla HOM05D000404 ORTHO05D024273 1.2e-13 79.3 47 83.0
Mapoly0043s0084 Marchantia polymorpha HOM05D000404 ORTHO05D001765 1.2e-13 79.3 66 57.6
MELO3C023067.2 Cucumis melo HOM05D000404 ORTHO05D001765 6.7e-12 73.6 61 60.7
Zm00001eb222250 Zea mays HOM05D000404 ORTHO05D001765 6.7e-12 73.6 64 57.8
Mapoly0043s0083 Marchantia polymorpha HOM05D000404 ORTHO05D001765 8.7e-12 73.2 62 53.2
HPP92_025579 Vanilla planifolia HOM05D000404 ORTHO05D001765 1.5e-11 72.4 66 56.1
CsaV3_2G012230 Cucumis sativus L. HOM05D000404 ORTHO05D001765 2.5e-11 71.6 45 64.4
SMO118G0262 Selaginella moellendorffii HOM05D000404 ORTHO05D001765 3.3e-11 71.2 65 53.8
AagrBONN_evm.TU.Sc2ySwM_344.3169 Anthoceros agrestis HOM05D000404 ORTHO05D001765 4.3e-11 70.9 66 51.5
Haze_11513 Corylus avellana HOM05D000404 ORTHO05D001765 7.4e-11 70.1 37 81.1
Haze_11519 Corylus avellana HOM05D000404 ORTHO05D001765 7.4e-11 70.1 37 81.1
Os10g0465700 Oryza sativa ssp. japonica HOM05D000404 ORTHO05D001765 7.4e-11 70.1 64 56.2
HPP92_025591 Vanilla planifolia HOM05D000404 ORTHO05D024273 7.4e-11 70.1 64 54.7
Cfa014833 Carpinus fangiana HOM05D000404 ORTHO05D001765 9.6e-11 69.7 37 81.1
HPP92_025577 Vanilla planifolia HOM05D000404 ORTHO05D001765 1.3e-10 69.3 66 54.5
Pp3c6_10130 Physcomitrium patens HOM05D000404 ORTHO05D001765 1.6e-10 68.9 67 49.3
Pp3c5_22190 Physcomitrium patens HOM05D000404 ORTHO05D001765 2.1e-10 68.6 67 49.3
Pp3c16_11260 Physcomitrium patens HOM05D000404 ORTHO05D001765 4.8e-10 67.4 67 47.8
ClCG06G007430 Citrullus lanatus HOM05D000404 ORTHO05D001765 6.2e-10 67.0 45 62.2
Pp3c25_2760 Physcomitrium patens HOM05D000404 ORTHO05D001765 1.1e-09 66.2 67 50.7
Sed0024807 Sechium edule HOM05D000404 ORTHO05D001765 2.0e-08 62.0 37 73.0
SEGI_31012 Sequoiadendron giganteum HOM05D000404 ORTHO05D001765 2.0e-08 62.0 66 50.0
Lalb_Chr14g0370411 Lupinus albus HOM05D000404 ORTHO05D001765 3.4e-08 61.2 39 66.7
SMO139G0111 Selaginella moellendorffii HOM05D000404 ORTHO05D001765 4.5e-08 60.8 65 46.2
GSVIVG01001863001 Vitis vinifera HOM05D000404 ORTHO05D001765 4.9e-07 57.4 34 79.4


User provided reference genes

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