Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 1.5e-127 459.5 233 100.0
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 9.6e-74 280.8 208 67.3
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 2.2e-70 269.6 210 64.8
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 2.9e-70 269.2 212 66.0
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 1.1e-69 267.3 210 65.7
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 1.1e-69 267.3 209 67.0
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 2.4e-69 266.2 210 62.4
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 2.4e-69 266.2 210 63.3
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 7.1e-69 264.6 211 64.5
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 1.2e-68 263.8 210 62.9
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 3.5e-68 262.3 210 63.3
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 4.6e-68 261.9 210 61.9
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 3.0e-67 259.2 211 61.1
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 5.1e-67 258.5 212 65.1
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 6.6e-67 258.1 210 61.9
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 6.6e-67 258.1 210 61.4
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 1.1e-66 257.3 210 62.9
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 1.5e-66 256.9 209 61.7
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.5e-66 256.9 210 60.5
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 1.9e-66 256.5 207 63.3
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 4.3e-66 255.4 207 60.4
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 4.3e-66 255.4 210 62.9
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 1.3e-65 253.8 198 63.1
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 1.6e-65 253.4 210 61.4
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 2.1e-65 253.1 211 62.1
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 2.8e-65 252.7 210 61.4
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 2.8e-65 252.7 207 65.2
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 6.2e-65 251.5 210 61.9
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 8.1e-65 251.1 210 60.5
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 1.1e-64 250.8 217 62.2
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 1.8e-64 250.0 207 64.3
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 2.4e-64 249.6 210 58.6
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 4.0e-64 248.8 210 60.5
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 2.0e-63 246.5 209 61.2
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 2.0e-63 246.5 210 62.9
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 2.6e-63 246.1 209 61.7
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 2.6e-63 246.1 230 57.0
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 3.4e-63 245.7 210 59.5
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 7.6e-63 244.6 210 61.0
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 9.9e-63 244.2 210 60.0
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 9.9e-63 244.2 210 63.3
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 1.7e-62 243.4 210 61.4
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 1.7e-62 243.4 210 58.6
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 2.2e-62 243.0 210 61.0
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 2.9e-62 242.7 210 56.7
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 3.8e-62 242.3 206 64.1
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 6.4e-62 241.5 207 60.4
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 1.4e-61 240.4 210 60.5
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 1.4e-61 240.4 210 59.5
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 1.9e-61 240.0 210 59.0
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 1.9e-61 240.0 210 57.1
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 2.4e-61 239.6 210 59.0
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 4.2e-61 238.8 210 57.1
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 5.4e-61 238.4 210 58.1
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 9.3e-61 237.7 210 56.7
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 1.6e-60 236.9 211 57.8
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 1.6e-60 236.9 210 57.1
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.6e-60 236.9 210 57.1
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.6e-60 236.9 210 57.1
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 3.5e-60 235.7 211 57.3
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 4.6e-60 235.3 210 55.7
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 4.6e-60 235.3 210 56.2
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 6.0e-60 235.0 210 57.6
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 7.9e-60 234.6 209 59.3
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 7.9e-60 234.6 210 57.6
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 1.0e-59 234.2 210 56.2
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 1.0e-59 234.2 210 57.6
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 3.0e-59 232.6 214 57.0
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 6.7e-59 231.5 210 55.2
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 6.7e-59 231.5 209 56.5
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 1.1e-58 230.7 194 60.3
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 1.9e-58 229.9 209 57.9
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 1.3e-57 227.3 210 56.2
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 3.7e-57 225.7 214 55.6
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 8.1e-57 224.6 194 59.8
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.1e-56 224.2 209 56.0
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.4e-56 223.0 192 61.5
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 4.0e-56 222.2 209 55.0
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 6.9e-56 221.5 207 55.6
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 9.0e-56 221.1 209 56.0
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 1.2e-55 220.7 230 52.6
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 2.6e-55 219.5 209 55.0
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 3.4e-55 219.2 211 55.9
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 4.5e-55 218.8 209 54.5
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 2.2e-54 216.5 206 55.3
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 2.2e-54 216.5 208 51.0
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 2.9e-54 216.1 206 55.3
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 4.9e-54 215.3 218 52.8
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 1.6e-52 210.3 209 54.1
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 2.1e-52 209.9 196 58.2
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 3.0e-51 206.1 215 52.1
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 4.3e-50 202.2 291 43.3
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 6.2e-49 198.4 206 51.9
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 4.0e-48 195.7 206 51.9
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 3.4e-47 192.6 217 49.3
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.1e-45 187.6 223 46.2
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 3.3e-42 176.0 132 65.2
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 7.9e-36 154.8 167 49.1
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 3.1e-32 142.9 224 39.3
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 4.1e-32 142.5 110 64.5
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 3.8e-30 136.0 115 60.9
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 6.5e-30 135.2 106 67.0
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 5.5e-29 132.1 245 35.5
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 2.1e-28 130.2 213 35.7
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 6.7e-27 125.2 97 63.9
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 1.1e-24 117.9 115 53.0
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 1.4e-19 100.9 81 64.2
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 3.9e-19 99.4 77 67.5
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 5.3e-16 89.0 53 77.4
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 1.8e-11 73.9 44 75.0
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 2.3e-11 73.6 204 28.9
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 4.0e-11 72.8 76 52.6


User provided reference genes

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