Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1726.1 855 100.0
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1385.5 845 80.7
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1365.1 845 79.5
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1363.2 845 79.4
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1360.9 845 78.3
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1357.8 848 78.9
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1356.3 845 78.9
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1353.2 845 77.8
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1348.6 845 78.8
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1344.3 845 77.2
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1340.1 845 77.8
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1335.9 845 78.1
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1334.3 850 77.9
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1332.8 843 77.7
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1329.3 844 77.6
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1328.2 845 77.9
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1327.4 845 77.8
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1325.8 848 76.3
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1325.5 846 77.0
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1325.1 845 77.5
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1324.7 845 77.5
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1321.6 845 76.4
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1320.4 845 77.3
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1316.6 846 77.0
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1315.4 846 76.4
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1313.5 845 76.4
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1310.8 845 76.6
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1306.2 932 70.5
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1302.0 845 76.4
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1302.0 848 74.6
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1301.6 847 75.7
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1300.8 842 76.0
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1297.3 846 76.0
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1295.8 843 75.9
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1290.8 845 74.1
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1290.4 840 74.3
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1288.5 910 71.3
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1288.1 845 74.1
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1287.7 843 75.8
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1285.4 845 75.4
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1284.6 843 75.4
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1283.1 843 74.6
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1282.3 862 74.5
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1282.3 843 75.4
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1282.3 843 75.0
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1280.8 862 74.4
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1280.4 842 75.3
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1280.0 850 74.0
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1279.6 842 74.5
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1278.5 850 73.8
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1275.8 842 74.3
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1273.8 843 74.0
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1273.5 845 74.6
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1273.1 851 72.5
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1272.3 851 72.4
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1271.9 844 74.8
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1271.9 856 72.3
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1271.1 852 72.5
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1268.1 896 71.4
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1267.3 850 71.8
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1267.3 850 71.8
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1265.4 851 71.7
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1262.7 846 74.5
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1261.9 856 73.2
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1260.0 850 73.2
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1259.2 842 74.3
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1255.7 845 73.8
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1255.4 852 72.3
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1255.4 852 71.8
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1254.6 843 73.4
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1254.2 844 73.3
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1253.8 844 73.3
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1245.0 800 76.2
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1242.3 932 68.1
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1240.7 825 73.5
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1239.9 845 72.2
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1234.2 847 72.3
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1231.9 845 71.6
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1230.3 853 70.1
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1227.2 877 69.1
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1226.1 844 71.7
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1220.3 845 71.0
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1219.9 841 71.3
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1204.1 855 70.2
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1180.6 843 70.2
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1179.9 791 72.7
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1177.5 845 69.8
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1175.2 853 68.2
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1168.7 853 70.0
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1158.7 765 75.6
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1151.3 738 77.9
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1145.6 842 68.5
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 5.8e-302 1040.8 792 68.1
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 2.1e-283 979.2 633 76.6
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 2.1e-272 942.6 858 56.5
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 9.0e-271 937.2 851 55.9
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 3.4e-254 882.1 858 52.9
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 9.7e-249 864.0 518 80.7
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 4.5e-246 855.1 658 64.4
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 1.6e-238 830.1 517 75.4
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 1.2e-235 820.5 581 69.9
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 2.4e-215 753.1 448 78.3
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 7.0e-215 751.5 448 78.1
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 3.9e-213 745.7 453 77.3
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 1.9e-212 743.4 471 74.5
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 2.8e-211 739.6 723 58.0
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 3.1e-210 736.1 564 66.5
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 6.8e-210 734.9 470 73.4
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 5.0e-205 718.8 496 69.0
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.1e-204 717.6 450 74.4
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 3.6e-203 712.6 466 72.7
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 1.7e-197 693.7 450 74.4
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 3.9e-197 692.6 461 71.4
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 3.4e-193 679.5 447 72.0
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 2.1e-187 660.2 485 65.8
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 1.3e-171 607.8 456 66.2
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 4.8e-171 605.9 450 68.2
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 2.2e-168 597.0 450 64.7
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 1.1e-156 558.1 366 73.5
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.0e-153 547.4 478 59.2
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.9e-152 543.5 366 72.1
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 4.0e-125 453.4 267 80.5
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 9.7e-124 448.7 274 80.3
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 2.2e-123 447.6 912 32.2
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 2.5e-119 434.1 286 74.8
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 7.0e-114 416.0 271 76.8
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 2.8e-107 394.0 266 74.1
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 3.7e-107 393.7 237 82.3
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.2e-105 388.7 213 86.4
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.3e-104 384.4 243 75.7
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 2.9e-99 367.5 295 63.1
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 2.3e-93 347.8 218 78.4
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 6.8e-93 346.3 235 72.8
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 1.1e-85 322.4 188 82.4
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 7.6e-76 289.7 156 85.3
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 1.9e-55 221.9 171 70.8
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.5e-47 194.9 156 62.2
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 2.1e-46 191.8 156 63.5
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 2.4e-45 188.3 121 71.1
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 3.4e-44 184.5 115 73.9
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 2.9e-43 181.4 178 55.6
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 6.9e-29 133.7 85 71.8
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 4.5e-28 131.0 83 69.9
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 1.4e-26 125.9 96 66.7
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 7.9e-25 120.2 96 64.6
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 2.2e-22 112.1 55 90.9
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 3.1e-21 108.2 66 71.2
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 2.9e-19 101.7 61 83.6
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 4.2e-18 97.8 58 72.4
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 5.1e-16 90.9 57 70.2
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 3.3e-15 88.2 54 72.2
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 9.7e-15 86.7 54 70.4
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 1.3e-14 86.3 46 80.4
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 2.2e-14 85.5 74 56.8
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 1.6e-12 79.3 73 57.5
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 8.5e-11 73.6 74 50.0
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 7.2e-10 70.5 41 78.0
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 2.1e-09 68.9 48 72.9
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 1.5e-07 62.8 44 61.4
AUR62036524 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.7e-06 59.3 47 59.6
ECA236G2630 Erigeron canadensis HOM05D000366 ORTHO05D000437 4.8e-06 57.8 39 74.4


User provided reference genes

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