Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 0.0e+00 1333.9 700 100.0
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 7.9e-265 917.1 707 69.4
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.3e-254 883.2 704 67.5
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.8e-248 860.5 711 66.2
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 8.2e-246 854.0 710 66.1
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 5.3e-245 851.3 712 66.0
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 4.5e-244 848.2 711 65.5
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 1.0e-243 847.0 707 65.1
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 2.2e-243 845.9 705 65.5
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.5e-242 842.4 710 64.6
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.1e-241 839.3 710 64.6
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.8e-240 836.3 706 65.6
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 8.2e-238 827.4 720 64.9
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 9.1e-237 823.9 712 63.8
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 1.0e-235 820.5 709 64.6
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 2.9e-235 818.9 710 63.8
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.9e-235 818.9 707 63.9
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.9e-234 816.2 864 55.2
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 8.0e-233 810.8 709 64.0
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 5.2e-232 808.1 704 62.6
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 9.8e-231 803.9 697 63.7
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 9.8e-231 803.9 712 63.6
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 5.4e-229 798.1 711 62.7
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.0e-228 796.2 722 62.0
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 4.5e-228 795.0 727 61.8
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.0e-227 793.9 711 62.3
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 1.7e-227 793.1 708 61.6
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 2.9e-227 792.3 708 63.1
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 2.9e-227 792.3 708 63.0
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 7.2e-226 787.7 711 62.6
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 2.3e-224 782.7 713 61.7
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.0e-224 782.3 714 63.0
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.8e-224 781.2 714 62.6
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.2e-223 780.4 713 62.6
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 2.0e-223 779.6 728 60.3
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.2e-222 776.2 698 62.9
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.9e-222 775.0 713 61.9
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.8e-221 773.1 713 62.1
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.4e-221 771.5 705 61.3
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 1.2e-220 770.4 699 61.5
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 4.5e-220 768.5 697 61.8
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 4.5e-220 768.5 711 61.9
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.7e-219 766.5 700 62.7
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 5.0e-219 765.0 711 60.6
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.6e-217 760.0 715 60.0
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 3.6e-217 758.8 708 60.6
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 8.0e-217 757.7 713 60.7
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 6.8e-216 754.6 710 59.9
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.0e-215 753.1 729 59.4
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 3.4e-215 752.3 725 58.2
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.3e-214 750.4 710 60.4
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 6.4e-214 748.0 707 60.8
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 4.1e-213 745.3 714 59.5
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 4.1e-213 745.3 727 58.0
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 2.0e-212 743.0 710 59.3
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 3.5e-212 742.3 715 59.3
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 1.0e-211 740.7 697 60.4
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 3.9e-211 738.8 714 59.5
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 1.9e-210 736.5 716 59.8
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 3.3e-210 735.7 713 58.9
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 4.3e-210 735.3 735 58.2
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 3.6e-209 732.3 720 58.2
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.1e-208 729.2 711 58.6
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.4e-207 725.7 712 59.0
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 4.9e-206 721.8 712 59.1
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.4e-206 721.5 712 58.4
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 1.4e-205 720.3 706 57.5
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 1.2e-204 717.2 715 58.2
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 4.6e-204 715.3 713 58.5
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 4.6e-204 715.3 708 57.9
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 7.8e-204 714.5 715 57.1
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.1e-202 710.7 736 56.0
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 7.3e-202 708.0 711 57.5
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 1.2e-201 707.2 713 57.4
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 2.1e-201 706.4 722 58.4
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 8.1e-201 704.5 718 58.6
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 1.4e-200 703.7 710 58.3
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.3e-200 703.0 711 57.9
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 2.3e-200 703.0 722 57.5
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.3e-200 703.0 708 57.8
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 2.0e-199 699.9 710 57.2
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.4e-199 699.1 711 57.2
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 3.4e-199 699.1 713 57.6
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 5.8e-199 698.4 711 57.7
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 5.8e-199 698.4 722 57.2
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 1.3e-198 697.2 710 57.9
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 2.9e-198 696.0 725 56.7
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 3.5e-196 689.1 718 58.6
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.7e-195 686.8 715 55.7
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 2.8e-193 679.5 714 56.6
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 4.7e-193 678.7 717 56.1
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 1.4e-192 677.2 722 55.3
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 4.4e-191 672.2 713 56.0
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 3.7e-190 669.1 716 54.6
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 5.4e-189 665.2 712 54.2
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 5.4e-189 665.2 712 54.2
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 9.2e-189 664.5 713 54.0
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 4.6e-188 662.1 710 54.2
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 7.8e-188 661.4 711 54.3
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 7.8e-188 661.4 711 54.1
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 3.0e-187 659.4 713 54.8
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 3.0e-187 659.4 710 54.1
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 5.1e-187 658.7 711 53.7
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 1.1e-186 657.5 717 55.0
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.9e-186 656.8 723 54.6
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 1.6e-185 653.7 714 54.9
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 3.6e-185 652.5 715 55.0
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 6.2e-185 651.7 699 55.9
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 8.9e-184 647.9 716 53.8
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.2e-183 647.5 717 55.9
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 1.5e-178 630.6 696 56.6
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 3.6e-177 625.9 715 51.9
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 4.2e-173 612.5 716 51.1
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 9.3e-173 611.3 728 51.9
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.7e-172 609.8 723 50.8
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 6.9e-168 595.1 705 51.9
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 4.5e-167 592.4 720 51.9
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 7.1e-165 585.1 712 51.1
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 2.1e-164 583.6 706 51.8
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 6.0e-164 582.0 642 54.0
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 6.7e-163 578.6 709 51.9
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 1.0e-158 564.7 696 51.0
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 4.6e-148 529.3 382 72.5
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 5.1e-147 525.8 374 73.5
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 5.1e-147 525.8 374 73.5
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 4.3e-146 522.7 734 46.9
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 4.5e-143 512.7 542 56.1
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 6.1e-132 475.7 745 42.7
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.7e-131 472.2 373 68.9
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 5.7e-130 469.2 694 45.1
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 6.5e-126 455.7 321 73.5
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 4.2e-125 453.0 606 47.0
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 1.5e-117 427.9 319 71.5
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 1.5e-98 364.8 737 39.3
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 2.3e-94 350.9 392 54.8
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 3.9e-94 350.1 392 54.1
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 4.3e-93 346.7 727 36.6
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 8.9e-91 339.0 743 37.1
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 3.2e-88 330.5 488 44.3
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 1.7e-86 324.7 759 35.6
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.7e-79 300.8 636 37.4
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 2.0e-74 284.6 392 46.4
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.3e-69 267.3 408 47.1
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 2.9e-65 254.2 347 46.4
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.7e-62 245.0 349 47.0
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 8.1e-60 236.1 468 37.6
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.5e-53 215.3 151 76.2
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 2.5e-53 214.5 332 44.0
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 6.4e-49 199.9 591 30.8
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 5.8e-42 176.8 230 47.0
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 6.0e-39 166.8 244 41.0
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 3.0e-38 164.5 163 62.0
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.7e-38 162.9 169 56.2
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 2.8e-36 157.9 256 43.4
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 8.8e-30 136.3 408 27.7
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 2.6e-26 124.8 69 88.4
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 5.9e-26 123.6 363 29.2
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.9e-25 121.3 69 82.6
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.4e-21 107.5 57 93.0
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.7e-20 104.4 62 80.6
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 1.4e-19 102.4 497 26.4
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 6.5e-17 93.6 51 84.3
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.2e-16 91.3 156 40.4
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 5.5e-16 90.5 51 82.4
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 7.2e-16 90.1 87 56.3
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 2.1e-15 88.6 57 78.9
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 8.0e-15 86.7 81 48.1
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.2e-14 84.0 87 52.9
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 2.6e-10 71.6 425 26.8
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 2.2e-09 68.6 360 24.2
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 6.5e-09 67.0 100 48.0
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.1e-08 66.2 39 74.4


User provided reference genes

Program Settings