Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 1.2e-115 419.9 214 100.0
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 7.9e-83 310.8 200 79.5
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 1.5e-81 306.6 202 75.7
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 3.3e-81 305.4 204 78.9
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 1.8e-79 299.7 203 74.9
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 9.1e-79 297.4 164 88.4
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 2.6e-78 295.8 207 73.9
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 7.7e-78 294.3 161 89.4
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 2.5e-76 289.3 200 75.0
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 5.5e-76 288.1 200 74.5
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 1.0e-74 283.9 200 71.5
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 1.4e-74 283.5 200 73.5
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 2.3e-74 282.7 201 73.6
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 3.0e-74 282.3 202 73.3
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 6.7e-74 281.2 184 77.7
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 8.8e-74 280.8 204 71.6
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 1.1e-73 280.4 197 72.1
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 9.7e-73 277.3 210 71.0
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 9.7e-73 277.3 201 70.6
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 9.7e-73 277.3 161 83.9
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 1.3e-72 276.9 186 76.3
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 2.8e-72 275.8 200 72.0
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 2.8e-72 275.8 161 83.2
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 3.7e-72 275.4 198 71.7
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 3.7e-72 275.4 202 72.8
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 4.8e-72 275.0 198 71.7
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 1.1e-71 273.9 202 71.8
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.1e-71 273.9 196 71.9
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 1.6e-70 270.0 169 77.5
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 2.0e-70 269.6 150 88.0
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 5.9e-70 268.1 165 81.2
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 7.7e-70 267.7 200 71.0
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.0e-69 267.3 214 64.5
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 1.7e-69 266.5 200 69.0
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 2.2e-69 266.2 167 77.2
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.9e-69 265.8 200 67.5
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 3.8e-69 265.4 203 67.5
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 5.0e-69 265.0 202 68.3
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 1.1e-68 263.8 200 66.0
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 1.1e-68 263.8 184 71.7
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.5e-68 263.5 210 64.8
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 1.5e-68 263.5 200 67.5
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 2.5e-68 262.7 161 78.3
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 3.2e-68 262.3 142 91.5
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 5.5e-68 261.5 200 67.0
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 7.2e-68 261.2 200 67.5
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 9.4e-68 260.8 198 66.2
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.2e-67 260.4 200 65.5
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.2e-67 260.4 200 67.5
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 1.6e-67 260.0 199 70.9
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.6e-67 260.0 200 67.5
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 2.7e-67 259.2 173 75.7
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.6e-67 258.8 200 66.5
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 3.6e-67 258.8 171 76.0
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 8.0e-67 257.7 200 67.0
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 1.0e-66 257.3 161 75.8
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 1.4e-66 256.9 161 77.0
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 1.4e-66 256.9 161 77.0
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 2.3e-66 256.1 173 75.7
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 3.0e-66 255.8 161 76.4
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 8.8e-66 254.2 202 64.4
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 8.8e-66 254.2 155 78.1
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 1.1e-65 253.8 160 76.2
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 1.1e-65 253.8 160 76.2
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.1e-65 253.8 209 66.5
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 1.1e-65 253.8 199 66.8
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 5.7e-65 251.5 192 68.2
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 5.7e-65 251.5 207 64.7
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 7.5e-65 251.1 201 65.2
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 9.7e-65 250.8 207 64.3
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 9.7e-65 250.8 200 63.5
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 3.7e-64 248.8 181 71.8
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 6.3e-64 248.1 207 64.7
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 8.2e-64 247.7 189 66.1
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 3.1e-63 245.7 161 73.3
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 4.1e-63 245.4 173 68.2
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 4.1e-63 245.4 200 63.0
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 4.1e-63 245.4 201 64.7
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 4.1e-63 245.4 207 64.3
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 4.1e-63 245.4 206 63.6
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 7.0e-63 244.6 200 65.5
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.2e-62 243.8 207 64.3
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 2.7e-62 242.7 157 75.2
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 2.7e-62 242.7 161 72.7
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 3.5e-62 242.3 171 70.8
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 3.5e-62 242.3 157 74.5
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 5.9e-62 241.5 160 75.0
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 5.9e-62 241.5 171 70.8
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 7.7e-62 241.1 199 62.3
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 7.7e-62 241.1 206 62.6
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 7.7e-62 241.1 200 64.0
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 1.3e-61 240.4 184 66.3
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 1.3e-61 240.4 199 63.8
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 4.2e-60 235.3 200 63.0
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 5.5e-60 235.0 164 68.9
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 5.5e-60 235.0 164 67.7
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 1.8e-58 229.9 203 60.1
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 3.0e-58 229.2 142 78.2
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 1.5e-57 226.9 159 70.4
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 2.6e-57 226.1 194 58.8
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 1.7e-56 223.4 142 76.1
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.8e-56 222.6 183 67.2
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 3.1e-55 219.2 160 68.1
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 3.1e-55 219.2 152 67.1
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 4.1e-55 218.8 160 68.8
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 7.0e-55 218.0 160 68.1
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 7.0e-55 218.0 160 68.1
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 3.5e-54 215.7 142 71.8
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.5e-54 215.3 160 67.5
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 7.7e-54 214.5 160 67.5
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 1.0e-53 214.2 179 61.5
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 1.4e-50 203.8 180 58.9
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 5.2e-50 201.8 155 63.2
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 8.8e-50 201.1 198 54.0
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.2e-49 200.7 117 85.5
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 9.8e-49 197.6 158 63.9
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 3.7e-48 195.7 207 55.1
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 1.5e-44 183.7 117 76.9
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 1.9e-44 183.3 164 53.7
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 4.3e-44 182.2 118 73.7
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 3.6e-43 179.1 110 80.0
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 1.3e-40 170.6 118 67.8
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 1.9e-36 156.8 131 64.1
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 1.6e-35 153.7 127 58.3
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.6e-35 153.7 146 60.3
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 2.0e-33 146.7 132 57.6
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 4.4e-33 145.6 139 56.1
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 5.4e-31 138.7 162 46.9
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 2.2e-24 116.7 114 56.1
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 4.6e-22 109.0 79 65.8
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 1.9e-20 103.6 59 81.4
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 3.1e-18 96.3 82 61.0
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 7.1e-15 85.1 97 53.6
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 2.0e-09 67.0 75 50.7
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 1.3e-08 64.3 74 50.0
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 1.3e-08 64.3 74 50.0
Sc09g0007140 Simmondsia chinensis HOM05D005088 ORTHO05D389638 1.2e-06 57.8 41 65.9


User provided reference genes

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