Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 4.3e-181 637.9 322 100.0
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 4.6e-135 485.0 322 75.2
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 3.9e-134 481.9 322 73.6
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 5.6e-133 478.0 322 73.3
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.5e-130 469.9 322 71.7
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 1.5e-130 469.9 322 73.6
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 3.4e-130 468.8 322 72.0
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 1.7e-129 466.5 323 72.4
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 1.7e-129 466.5 324 71.9
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 1.7e-129 466.5 323 73.1
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 1.3e-126 456.8 299 76.6
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 3.0e-126 455.7 312 73.4
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 3.9e-126 455.3 321 69.8
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 6.7e-126 454.5 307 73.0
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.1e-125 453.8 324 70.7
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 1.9e-125 453.0 326 69.9
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 7.4e-125 451.1 319 69.3
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 2.1e-124 449.5 324 70.4
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 2.4e-123 446.0 322 69.9
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 6.9e-123 444.5 323 70.6
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 2.0e-122 443.0 323 68.7
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 1.0e-121 440.7 324 68.8
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 1.0e-121 440.7 323 70.0
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 1.7e-121 439.9 325 69.5
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 2.2e-121 439.5 329 69.6
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 3.8e-121 438.7 324 69.8
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 2.5e-120 436.0 325 70.2
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 9.3e-120 434.1 323 69.7
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 1.2e-119 433.7 321 68.5
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 3.5e-119 432.2 363 62.5
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 6.1e-119 431.4 309 71.5
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 7.9e-119 431.0 323 68.1
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.0e-118 430.6 324 67.9
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.0e-118 430.6 324 67.9
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 1.8e-118 429.9 324 67.6
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 2.3e-118 429.5 324 68.8
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 2.3e-118 429.5 318 70.1
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.5e-117 426.8 324 68.8
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 3.3e-117 425.6 311 70.4
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 4.3e-117 425.2 324 67.3
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 5.7e-117 424.9 322 68.0
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 1.6e-116 423.3 323 66.6
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 2.8e-116 422.5 323 66.9
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 2.8e-116 422.5 300 71.0
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 3.7e-116 422.2 323 66.6
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 3.1e-115 419.1 324 67.9
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.0e-114 416.4 323 65.6
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 2.6e-114 416.0 329 67.2
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 2.2e-113 412.9 322 66.1
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 6.5e-113 411.4 325 66.5
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 6.5e-113 411.4 305 68.9
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 6.5e-113 411.4 324 65.4
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 8.5e-113 411.0 308 69.5
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 8.5e-113 411.0 317 68.1
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 3.2e-112 409.1 320 62.8
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 5.5e-112 408.3 323 65.9
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 6.1e-111 404.8 323 65.6
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 1.0e-110 404.1 292 68.8
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 3.0e-110 402.5 336 62.8
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 6.7e-110 401.4 290 68.6
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 6.7e-110 401.4 299 68.2
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 8.8e-110 401.0 325 62.8
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.1e-109 400.6 324 63.3
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 1.1e-109 400.6 324 63.6
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.8e-108 396.0 323 63.8
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 4.8e-108 395.2 341 62.2
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 1.4e-107 393.7 294 67.3
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 2.4e-107 392.9 290 67.6
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 6.9e-107 391.3 320 62.5
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 3.4e-106 389.0 311 64.3
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 5.9e-106 388.3 308 66.6
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 1.3e-105 387.1 320 62.8
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 1.4e-104 383.6 300 65.3
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 1.9e-104 383.3 328 60.4
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 3.2e-104 382.5 290 66.6
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 4.2e-104 382.1 290 65.5
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 4.2e-104 382.1 322 62.4
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 7.2e-104 381.3 322 60.2
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.2e-103 380.6 284 69.0
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 2.1e-103 379.8 294 66.0
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 3.6e-103 379.0 320 62.2
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 1.0e-102 377.5 290 67.6
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 1.4e-102 377.1 290 65.5
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 6.7e-102 374.8 301 65.1
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 1.1e-101 374.0 294 65.0
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 1.5e-101 373.6 290 64.8
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 2.6e-101 372.9 271 69.7
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.3e-100 370.5 286 65.4
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 1.3e-100 370.5 309 62.1
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 1.8e-99 366.7 294 64.6
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 4.1e-99 365.5 321 60.4
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 5.3e-99 365.2 321 60.4
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 7.0e-99 364.8 340 58.2
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 7.0e-99 364.8 293 63.5
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 1.7e-97 360.1 321 60.7
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 5.5e-96 355.1 370 53.0
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 2.7e-90 336.3 340 52.9
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 3.8e-89 332.4 314 58.0
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 2.5e-88 329.7 352 53.7
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.3e-86 323.2 220 75.0
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.5e-85 320.5 347 53.9
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 3.7e-84 315.8 324 53.7
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 4.1e-83 312.4 223 72.2
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 1.2e-79 300.8 245 65.7
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 3.8e-73 279.3 198 74.2
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 3.3e-72 276.2 327 47.1
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 4.7e-71 272.3 226 65.9
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 5.9e-66 255.4 297 46.8
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.1e-64 251.1 226 58.8
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 4.9e-60 235.7 297 46.5
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 6.0e-58 228.8 361 39.9
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 1.2e-55 221.1 153 69.9
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 3.9e-49 199.5 202 54.5
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 9.9e-37 158.3 121 64.5
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 3.4e-29 133.3 175 48.6
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 1.7e-28 131.0 96 68.8
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.9e-27 127.5 115 58.3
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 1.2e-26 124.8 297 32.3
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 6.7e-25 119.0 79 70.9
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 6.7e-25 119.0 79 70.9
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 8.7e-25 118.6 355 27.9
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 2.4e-22 110.5 348 27.0
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 2.0e-21 107.5 86 67.4
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 4.5e-21 106.3 86 66.3
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 4.5e-21 106.3 86 66.3
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 2.2e-20 104.0 80 70.0
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 1.2e-18 98.2 68 63.2
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 1.9e-16 90.9 231 33.3
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 1.3e-15 88.2 86 54.7
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 1.3e-12 78.2 52 65.4
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 2.9e-12 77.0 47 74.5
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 3.8e-12 76.6 305 23.3
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.6e-07 61.2 64 46.9
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.8e-06 57.8 47 68.1


User provided reference genes

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