Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 0.0e+00 1482.2 756 100.0
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 0.0e+00 1376.3 759 92.8
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 0.0e+00 1374.4 759 92.2
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 0.0e+00 1317.4 759 88.9
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 0.0e+00 1314.3 761 89.8
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 0.0e+00 1258.4 760 86.6
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 0.0e+00 1227.2 760 84.2
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 0.0e+00 1226.1 762 84.5
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 0.0e+00 1223.0 762 84.4
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 0.0e+00 1222.2 762 84.3
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 0.0e+00 1220.3 760 83.7
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 0.0e+00 1192.2 758 81.9
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 0.0e+00 1187.2 759 81.2
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 0.0e+00 1181.0 659 91.4
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 0.0e+00 1103.2 755 75.2
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1099.7 755 74.6
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 0.0e+00 1093.6 754 75.3
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 0.0e+00 1090.5 754 74.9
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1087.0 755 73.9
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 0.0e+00 1085.1 759 74.4
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1083.6 763 73.1
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 0.0e+00 1080.1 750 74.9
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 0.0e+00 1075.5 759 73.6
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 2.3e-310 1068.5 760 73.2
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 2.3e-310 1068.5 757 73.8
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 1.1e-309 1066.2 754 73.6
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 1.1e-309 1066.2 757 73.4
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.6e-308 1062.4 760 72.2
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 3.7e-308 1061.2 756 72.9
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 2.4e-307 1058.5 752 72.7
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 9.0e-307 1056.6 752 72.6
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.4e-306 1054.7 756 73.8
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 5.8e-306 1053.9 755 73.2
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 5.8e-306 1053.9 750 72.1
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.0e-305 1053.1 753 72.4
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 2.5e-304 1048.5 755 72.6
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 2.1e-303 1045.4 751 72.7
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 6.0e-303 1043.9 750 72.5
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 7.9e-303 1043.5 759 71.5
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 1.8e-302 1042.3 757 72.1
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.1e-301 1039.6 766 72.7
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 3.3e-301 1038.1 757 71.2
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 4.3e-301 1037.7 762 70.5
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 7.4e-301 1036.9 753 70.7
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 7.4e-301 1036.9 752 72.5
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 7.4e-301 1036.9 755 72.1
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 9.7e-301 1036.6 755 71.1
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 9.7e-301 1036.6 801 68.7
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 1.4e-299 1032.7 757 71.6
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 9.0e-299 1030.0 752 71.7
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 7.7e-298 1026.9 754 70.4
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 7.7e-298 1026.9 757 70.8
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 1.3e-297 1026.2 760 70.7
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 2.2e-297 1025.4 794 68.1
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 6.5e-297 1023.8 755 69.9
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 3.2e-296 1021.5 798 68.5
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 3.2e-296 1021.5 760 70.5
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 9.4e-296 1020.0 754 70.4
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 1.2e-295 1019.6 791 68.5
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 1.6e-295 1019.2 758 70.8
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 7.9e-295 1016.9 759 70.5
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 7.9e-295 1016.9 755 69.7
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 1.0e-294 1016.5 756 69.6
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 2.3e-294 1015.4 758 70.7
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 2.3e-294 1015.4 756 70.6
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 3.9e-294 1014.6 755 69.8
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.1e-293 1013.1 755 69.8
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 1.5e-293 1012.7 757 70.9
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.5e-293 1012.7 756 71.7
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 7.4e-293 1010.4 755 71.1
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 3.1e-291 1005.0 762 70.3
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 4.1e-291 1004.6 757 69.2
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 9.1e-291 1003.4 756 71.6
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 1.2e-290 1003.0 760 70.1
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 2.0e-290 1002.3 758 70.1
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 5.0e-289 997.7 756 69.7
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 5.0e-289 997.7 758 67.5
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.9e-288 995.7 743 69.7
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 4.7e-287 991.1 754 68.3
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.8e-286 989.2 781 66.8
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 8.8e-286 986.9 779 67.8
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 1.7e-284 982.6 704 73.4
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 5.3e-283 977.6 751 67.1
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 7.0e-283 977.2 753 67.2
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 4.5e-282 974.5 756 66.1
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 7.4e-277 957.2 716 70.5
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 3.5e-274 948.3 717 68.6
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 4.2e-272 941.4 657 74.1
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 4.4e-269 931.4 755 66.9
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 2.8e-268 928.7 709 68.3
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 1.4e-267 926.4 656 74.4
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 1.4e-259 899.8 847 57.9
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 3.1e-246 855.5 753 59.5
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 3.2e-243 845.5 750 60.0
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 5.2e-230 801.6 540 75.6
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.9e-225 785.4 730 59.6
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 9.3e-219 764.2 505 77.8
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 3.0e-217 759.2 563 70.5
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 5.1e-209 731.9 566 68.2
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 1.3e-207 727.2 615 64.2
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 7.9e-186 654.8 630 56.7
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.4e-182 643.3 524 66.4
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 4.5e-173 612.5 698 52.0
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 1.1e-166 591.3 461 67.2
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 9.4e-163 578.2 466 65.7
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 3.0e-161 573.2 429 69.9
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 7.0e-158 562.0 443 67.7
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.8e-140 503.1 423 63.4
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 1.9e-139 500.7 433 58.9
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 2.1e-138 497.3 428 59.6
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.9e-131 474.2 403 62.5
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 2.4e-126 457.2 372 64.2
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.0e-124 451.8 372 63.7
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 2.1e-122 444.1 516 52.1
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 6.6e-100 369.4 223 83.0
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.5e-91 341.7 261 70.1
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 2.6e-88 330.9 208 78.4
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 6.7e-68 263.1 230 59.6
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 3.7e-66 257.3 160 79.4
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 1.5e-64 251.9 169 74.0
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 7.9e-61 239.6 140 87.1
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 3.3e-51 207.6 141 73.8
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 7.0e-49 199.9 156 66.7
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 9.1e-49 199.5 298 41.6
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.3e-47 195.7 132 74.2
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 1.4e-44 185.7 312 42.3
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 2.6e-43 181.4 190 51.1
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 7.5e-43 179.9 101 84.2
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 4.8e-42 177.2 106 84.0
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 8.8e-36 156.4 294 36.1
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 2.2e-34 151.8 135 63.7
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.1e-33 149.4 148 54.7
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 2.4e-33 148.3 93 80.6
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.0e-31 142.9 143 53.8
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 3.4e-27 127.9 81 75.3
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.8e-25 122.1 89 68.5
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 7.3e-22 110.2 113 51.3
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 1.4e-20 105.9 132 48.5
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 2.6e-19 101.7 71 69.0
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 1.4e-17 95.9 143 45.5
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 4.6e-16 90.9 53 83.0
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 4.6e-16 90.9 56 71.4
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 1.0e-15 89.7 52 82.7
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 5.0e-15 87.4 56 67.9
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 1.9e-14 85.5 80 58.8
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 3.3e-14 84.7 52 76.9
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 6.2e-13 80.5 121 38.8
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 1.8e-12 79.0 73 58.9
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 1.7e-10 72.4 43 76.7
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.2e-09 66.6 36 91.7
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.3e-06 57.8 29 96.6
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.3e-06 57.8 29 96.6


User provided reference genes

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