Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 0.0e+00 1178.3 607 100.0
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 0.0e+00 1124.0 605 95.2
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 0.0e+00 1108.6 609 94.1
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 0.0e+00 1095.5 598 94.0
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 0.0e+00 1089.7 603 92.9
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 0.0e+00 1078.9 601 91.7
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 4.2e-312 1074.7 603 90.0
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.6e-309 1065.4 603 90.4
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 3.5e-309 1064.3 603 90.2
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 4.5e-309 1063.9 604 88.9
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 3.8e-308 1060.8 603 90.0
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 1.5e-307 1058.9 603 89.9
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 1.5e-307 1058.9 603 89.9
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 1.5e-307 1058.9 603 89.9
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.9e-299 1031.9 624 86.1
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 9.5e-299 1029.6 603 86.9
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 5.8e-288 993.8 601 83.5
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.1e-286 989.6 601 83.7
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 8.9e-273 943.3 596 80.2
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 9.2e-270 933.3 596 79.2
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 2.7e-269 931.8 596 79.2
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 4.3e-267 924.5 596 78.2
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.6e-266 922.5 594 78.8
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 8.1e-266 920.2 599 78.3
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.8e-265 919.1 606 77.9
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.8e-265 919.1 596 77.9
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.1e-265 918.3 600 77.8
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 6.9e-265 917.1 596 78.2
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 7.6e-264 913.7 614 76.2
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 2.2e-263 912.1 603 76.5
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 3.8e-263 911.4 589 77.8
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 9.3e-262 906.7 600 76.5
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.6e-261 906.0 582 78.4
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 2.1e-261 905.6 600 75.8
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 3.5e-261 904.8 590 77.5
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 1.7e-260 902.5 620 75.0
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 3.9e-260 901.4 602 75.9
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 2.5e-259 898.7 593 76.1
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.8e-258 895.2 479 95.8
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 4.8e-258 894.4 601 74.9
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 6.2e-258 894.0 598 75.6
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.4e-257 892.9 644 71.9
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.8e-257 892.5 597 75.7
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.8e-257 892.5 601 74.7
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 4.0e-257 891.3 601 74.2
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.0e-257 891.3 597 75.5
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 6.9e-257 890.6 607 75.1
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 9.0e-257 890.2 597 75.9
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.5e-256 889.4 597 75.9
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.0e-256 889.0 596 75.0
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 2.6e-256 888.6 597 74.4
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 3.4e-256 888.3 601 74.7
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 5.8e-256 887.5 597 75.0
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.3e-255 886.3 601 74.0
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.9e-255 885.2 602 74.9
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 2.9e-255 885.2 601 75.2
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 3.8e-255 884.8 601 74.0
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 6.4e-255 884.0 601 73.5
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.1e-254 883.2 596 75.2
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.1e-254 883.2 597 75.7
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.1e-254 883.2 602 74.6
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.4e-254 882.9 597 75.0
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 1.9e-254 882.5 601 73.4
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 7.1e-254 880.6 601 75.0
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 9.3e-254 880.2 597 74.0
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.6e-253 879.4 596 74.7
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 3.5e-253 878.2 597 74.4
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 6.0e-253 877.5 596 75.0
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 7.9e-253 877.1 596 74.7
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.8e-252 875.9 592 74.0
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.8e-252 875.9 596 74.8
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 2.3e-252 875.5 600 74.7
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.7e-252 874.0 593 74.7
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.1e-251 873.2 601 74.4
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.1e-251 873.2 601 74.0
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.5e-251 872.8 617 72.9
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.5e-251 872.8 594 73.9
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.9e-251 872.5 596 74.8
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 4.3e-251 871.3 593 74.5
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 5.6e-251 870.9 565 77.7
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.1e-249 866.7 594 73.2
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.8e-249 865.9 589 74.5
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.8e-249 865.9 677 67.9
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 5.3e-249 864.4 601 73.4
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 5.3e-249 864.4 598 74.2
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 1.5e-248 862.8 599 73.0
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 2.9e-247 858.6 613 71.3
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 2.4e-246 855.5 591 73.6
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 3.2e-246 855.1 607 71.8
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 5.5e-246 854.4 591 73.4
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 7.9e-245 850.5 653 67.4
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 8.7e-244 847.0 568 75.9
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.8e-241 839.3 561 74.7
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 1.8e-241 839.3 545 77.4
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 5.8e-240 834.3 598 70.2
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 1.0e-239 833.6 596 69.6
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.0e-239 833.6 601 71.9
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 6.0e-237 824.3 599 69.8
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 3.0e-236 822.0 600 70.0
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.1e-235 820.1 600 69.5
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.3e-235 818.5 564 74.1
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.3e-234 816.6 539 75.3
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 3.7e-234 815.1 550 74.4
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.1e-233 813.5 596 72.0
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 7.2e-230 800.8 601 69.2
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 6.1e-229 797.7 601 68.9
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 7.4e-227 790.8 611 67.1
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.7e-226 789.6 430 92.6
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 9.1e-225 783.9 639 64.5
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.1e-217 758.8 476 80.9
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.0e-215 753.8 600 65.8
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.3e-215 753.4 646 61.0
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.4e-212 743.4 599 64.1
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 7.4e-211 737.6 503 73.6
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 1.3e-210 736.9 496 75.2
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 8.2e-210 734.2 588 63.1
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.2e-206 722.2 601 63.4
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 8.6e-191 671.0 554 64.1
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 8.3e-178 627.9 430 73.0
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 1.2e-176 624.0 369 87.3
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.6e-176 623.6 503 64.8
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.1e-173 613.2 608 53.0
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 4.6e-168 595.5 590 52.2
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 2.3e-164 583.2 583 50.8
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 2.0e-155 553.5 439 64.9
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 1.7e-143 513.8 336 76.8
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 1.5e-139 500.7 610 45.9
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 9.0e-132 474.9 418 58.4
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.5e-131 474.2 577 44.5
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.7e-125 453.0 531 50.8
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.1e-124 451.4 286 80.4
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.1e-119 432.6 334 66.8
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.1e-112 410.6 246 80.9
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 3.4e-107 393.3 281 70.8
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 7.4e-102 375.6 435 48.0
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 9.1e-84 315.5 314 55.7
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.7e-83 313.9 272 61.0
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 9.1e-76 288.9 156 91.7
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 6.6e-74 282.7 684 31.1
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.7e-69 266.9 171 79.5
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 8.3e-69 265.8 550 33.1
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 2.1e-56 224.6 149 77.2
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 3.6e-56 223.8 153 75.2
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.5e-43 180.6 102 85.3
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 6.6e-42 176.4 105 81.0
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.1e-40 171.4 635 25.8
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 4.9e-37 160.2 97 81.4
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.7e-34 151.8 97 77.3
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.1e-31 142.5 96 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.4e-31 142.1 186 43.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 6.9e-31 139.8 120 55.8
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.3e-21 109.0 66 80.3
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 3.8e-21 107.5 629 24.6
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 6.0e-19 100.1 78 60.3
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 2.3e-18 98.2 70 68.6
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 6.2e-16 90.1 193 32.1
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.4e-15 89.0 69 59.4
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.0e-13 82.8 95 51.6
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.0e-13 82.8 71 53.5
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.7e-13 82.0 49 75.5
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 8.4e-13 79.7 48 75.0
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 7.4e-09 66.6 62 62.9
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 9.6e-09 66.2 51 68.6
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 2.8e-08 64.7 51 66.7
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 5.3e-07 60.5 52 63.5


User provided reference genes

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