Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 5.2e-173 610.9 303 100.0
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 6.0e-145 517.7 313 84.0
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 7.4e-143 510.8 321 80.7
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 6.3e-142 507.7 307 82.1
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 4.1e-141 505.0 326 80.1
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 6.9e-141 504.2 313 81.5
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 3.4e-140 501.9 316 80.4
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 2.9e-139 498.8 316 79.7
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 7.2e-138 494.2 318 79.2
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 7.2e-138 494.2 318 79.6
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 7.2e-138 494.2 318 79.6
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 4.6e-137 491.5 316 79.4
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 2.2e-123 446.0 323 73.1
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 7.7e-108 394.4 327 64.5
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.0e-99 367.5 312 60.6
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 8.6e-99 364.4 332 59.6
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 3.2e-98 362.5 327 57.8
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 5.5e-98 361.7 336 57.4
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.6e-97 360.1 327 56.6
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 2.1e-97 359.8 326 56.7
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 2.1e-97 359.8 330 57.6
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 2.8e-97 359.4 329 56.8
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 2.8e-97 359.4 333 57.7
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 2.8e-97 359.4 335 57.0
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 3.6e-97 359.0 333 56.8
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.7e-97 358.6 327 56.6
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.0e-96 357.5 332 56.6
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.0e-96 357.5 336 56.8
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 2.3e-96 356.3 329 58.7
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 4.0e-96 355.5 331 57.4
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 5.2e-96 355.1 333 57.1
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 6.8e-96 354.8 327 57.8
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 2.0e-95 353.2 332 56.6
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 2.6e-95 352.8 329 57.1
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 3.4e-95 352.4 331 55.3
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 3.4e-95 352.4 334 56.9
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 7.5e-95 351.3 336 57.7
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 7.5e-95 351.3 331 56.8
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 9.8e-95 350.9 336 56.5
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 1.3e-94 350.5 329 54.1
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 1.3e-94 350.5 332 56.0
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 2.8e-94 349.4 336 55.7
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 4.9e-94 348.6 333 55.9
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 6.3e-94 348.2 333 55.9
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 8.3e-94 347.8 336 56.5
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 3.1e-93 345.9 324 56.8
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 4.1e-93 345.5 335 55.2
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 4.1e-93 345.5 335 56.7
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 7.0e-93 344.7 331 55.0
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 7.0e-93 344.7 328 57.3
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 1.2e-92 344.0 332 56.3
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 3.5e-92 342.4 336 55.7
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 5.9e-92 341.7 345 53.9
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 1.3e-91 340.5 336 56.0
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.7e-91 340.1 335 55.8
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 2.3e-91 339.7 340 53.8
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 2.3e-91 339.7 336 55.7
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 2.3e-91 339.7 335 54.9
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 5.0e-91 338.6 336 53.9
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 8.6e-91 337.8 371 50.1
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.5e-90 337.0 329 54.7
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.5e-90 337.0 329 54.7
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 1.9e-90 336.7 350 52.6
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 5.6e-90 335.1 310 59.0
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 7.3e-90 334.7 314 57.3
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 7.3e-90 334.7 331 54.4
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 9.5e-90 334.3 332 53.3
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.2e-89 334.0 336 53.6
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 1.6e-89 333.6 324 56.2
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 2.8e-89 332.8 328 54.9
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 4.7e-89 332.0 332 55.7
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 6.1e-89 331.6 361 52.1
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 1.0e-88 330.9 326 53.4
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 1.4e-88 330.5 322 55.9
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.8e-88 330.1 331 55.6
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 2.3e-88 329.7 333 54.7
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 5.2e-88 328.6 340 52.4
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 6.8e-88 328.2 331 52.6
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 3.4e-87 325.9 336 53.0
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.3e-86 323.9 301 56.8
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 3.7e-86 322.4 327 54.4
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 6.4e-86 321.6 323 53.9
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 8.3e-86 321.2 335 52.5
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 5.4e-85 318.5 296 57.4
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 4.6e-84 315.5 338 51.2
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 4.3e-82 308.9 314 51.3
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 2.8e-81 306.2 323 52.3
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 2.0e-79 300.1 356 47.5
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 2.0e-76 290.0 292 53.4
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.7e-75 287.0 323 51.7
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 3.9e-75 285.8 323 51.4
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 3.3e-74 282.7 355 45.9
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 2.6e-71 273.1 314 48.4
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 2.9e-70 269.6 332 44.9
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 6.4e-70 268.5 314 49.4
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.0e-67 261.2 298 50.0
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 1.5e-66 257.3 288 50.3
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 3.6e-65 252.7 269 50.2
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 3.1e-64 249.6 173 75.1
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 2.9e-62 243.0 240 55.4
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 6.9e-56 221.9 235 52.8
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 4.4e-55 219.2 462 33.8
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 3.2e-53 213.0 332 39.2
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 5.4e-53 212.2 312 39.7
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 6.2e-49 198.7 314 39.8
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 8.7e-43 178.3 146 61.0
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 5.6e-42 175.6 163 55.2
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 1.4e-37 161.0 163 55.2
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.1e-34 151.4 146 53.4
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.5e-34 151.0 164 48.8
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 5.6e-34 149.1 82 85.4
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.8e-32 144.1 125 59.2
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 4.5e-31 139.4 158 50.0
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.8e-27 127.5 103 61.2
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 1.6e-25 120.9 157 43.9
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 2.1e-20 104.0 58 82.8
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 1.7e-17 94.4 132 43.2
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 2.9e-14 83.6 68 54.4
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 6.5e-14 82.4 57 61.4
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 5.5e-13 79.3 82 54.9
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 5.7e-10 69.3 46 69.6


User provided reference genes

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