Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 0.0e+00 1273.8 713 100.0
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.9e-207 724.9 696 65.9
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.1e-184 649.0 778 55.7
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 3.2e-144 516.5 762 48.8
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.4e-139 501.1 754 48.5
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.9e-136 490.7 782 51.4
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.5e-133 480.3 765 46.9
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.7e-113 414.5 780 42.4
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.5e-112 409.5 756 45.2
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 3.5e-111 406.8 743 42.7
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 3.5e-111 406.8 743 42.7
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.7e-105 387.9 743 42.0
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.4e-104 384.8 750 42.8
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 1.3e-100 371.7 773 43.7
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 3.1e-99 367.1 770 44.0
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 4.1e-99 366.7 736 42.1
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 5.3e-99 366.3 762 44.4
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.2e-98 365.2 740 40.4
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.2e-98 365.2 744 44.4
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 2.1e-95 354.4 714 42.2
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 6.7e-94 349.4 708 41.5
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 5.9e-90 336.3 724 41.0
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.2e-80 303.9 804 40.4
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 6.7e-78 296.2 744 41.7
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 6.7e-78 296.2 744 41.7
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 5.7e-77 293.1 744 41.4
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 1.6e-71 275.0 728 39.4
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 8.0e-71 272.7 905 36.8
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 9.7e-69 265.8 723 38.2
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.4e-62 245.4 737 42.7
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.7e-60 237.3 728 33.9
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.5e-56 224.6 722 33.4
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 8.3e-52 209.5 737 32.0
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 9.2e-51 206.1 736 32.3
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.3e-49 202.2 736 31.9
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 7.3e-48 196.4 747 30.9
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.8e-47 194.5 739 31.5
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 6.1e-47 193.4 675 33.9
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 2.3e-46 191.4 742 31.5
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 7.5e-45 186.4 735 31.6
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.3e-44 185.7 736 30.7
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.3e-44 185.7 739 30.0
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.2e-42 179.1 732 30.3
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.7e-42 177.9 640 32.3
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.7e-25 122.1 452 29.2
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.7e-18 98.2 166 49.4
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.4e-12 77.0 129 51.9
BolC1t02156H Brassica oleracea HOM05D004189 ORTHO05D031907 1.4e-11 75.9 88 50.0
BcaC09g50698 Brassica carinata HOM05D004189 ORTHO05D031907 5.4e-11 73.9 88 48.9
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 4.6e-10 70.9 268 28.0
C01p22260 Brassica napus HOM05D004189 ORTHO05D031907 3.0e-09 68.2 80 48.8
CARHR119580 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.5e-08 65.9 73 52.1
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 1.9e-08 65.5 72 52.8
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 2.8e-07 61.6 59 55.9
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.6e-07 61.2 185 36.8
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 4.8e-07 60.8 183 37.7
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 4.8e-07 60.8 230 34.8
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 6.2e-07 60.5 72 50.0
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 6.2e-07 60.5 72 50.0
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.1e-06 59.7 606 24.4
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 1.4e-06 59.3 72 48.6
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.4e-06 59.3 705 24.8
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.4e-06 58.5 726 23.4
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 4.0e-06 57.8 729 24.1
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 5.3e-06 57.4 473 26.4
BcaB05g21948 Brassica carinata HOM05D000139 ORTHO05D000103 5.3e-06 57.4 83 51.8


User provided reference genes

Program Settings