Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 0.0e+00 1208.7 635 100.0
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.7e-256 888.6 640 77.5
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.1e-220 768.5 639 69.3
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 5.2e-215 751.5 632 69.5
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.3e-213 746.9 656 66.0
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 9.2e-196 687.6 711 59.2
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 6.0e-195 684.9 639 64.0
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 6.0e-195 684.9 639 64.0
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 6.9e-191 671.4 700 57.9
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 9.0e-191 671.0 703 58.3
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 4.4e-190 668.7 645 63.1
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 7.6e-190 667.9 639 62.8
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 3.0e-186 656.0 706 57.8
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 3.6e-184 649.0 679 57.6
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 5.3e-175 618.6 694 55.9
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.1e-167 594.3 643 58.6
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 1.8e-167 593.6 673 54.8
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 3.1e-143 513.1 762 48.8
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.1e-127 461.5 656 49.1
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.1e-123 445.7 786 44.4
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 5.2e-114 416.0 726 42.7
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 8.9e-114 415.2 635 46.9
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.7e-112 409.8 767 41.2
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.4e-111 406.0 753 42.9
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.0e-110 404.1 821 40.8
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 9.5e-108 395.2 646 44.6
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 6.1e-107 392.5 656 43.9
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.8e-106 391.0 646 44.6
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.2e-106 389.4 707 41.7
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 5.6e-100 369.4 636 44.0
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 8.0e-99 365.5 650 42.9
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.1e-98 365.2 562 45.6
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 4.4e-97 359.8 694 41.9
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 4.4e-97 359.8 694 41.9
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 5.8e-97 359.4 638 43.7
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 3.2e-95 353.6 654 41.9
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.2e-95 353.6 777 39.5
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 1.6e-94 351.3 694 41.6
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.7e-93 347.8 642 42.2
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 2.8e-91 340.5 667 42.3
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.6e-91 340.1 669 40.7
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.1e-90 337.0 602 42.9
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.1e-86 324.3 908 34.4
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 8.1e-83 312.4 351 55.3
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-82 311.6 712 38.2
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 6.0e-54 216.5 669 33.2
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.3e-53 215.3 676 33.0
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 2.6e-49 201.1 667 31.2
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 3.2e-47 194.1 681 31.6
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.0e-45 189.1 652 32.2
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 6.3e-43 179.9 691 30.5
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 3.4e-41 174.1 708 29.2
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 4.5e-41 173.7 676 29.4
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.1e-39 169.1 686 30.8
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.9e-39 168.3 668 30.1
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.8e-37 161.8 635 30.9
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.3e-36 157.5 660 29.7
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 9.7e-36 156.0 116 78.4
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 9.7e-36 156.0 474 32.9
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 9.7e-36 156.0 470 34.7
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.2e-35 154.8 430 34.4
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.1e-34 151.0 165 62.4
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.4e-33 147.5 656 28.7
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 4.5e-33 147.1 678 30.7
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 5.9e-33 146.7 391 36.6
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.9e-31 141.7 474 34.0
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 5.5e-31 140.2 688 29.7
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.6e-30 138.7 686 29.4
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.0e-29 136.0 731 30.0
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.8e-29 135.2 436 34.6
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.9e-29 134.0 730 27.4
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 5.1e-29 133.7 603 29.9
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 6.7e-29 133.3 728 29.1
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.4e-28 129.8 714 27.0
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.7e-27 128.6 645 28.4
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 2.4e-26 124.8 465 31.6
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 5.9e-25 120.2 584 27.2
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 7.7e-25 119.8 737 26.6
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 1.0e-24 119.4 692 26.7
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.2e-24 118.2 556 29.9
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 1.4e-23 115.5 583 26.8
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.4e-23 115.5 772 26.4
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 5.5e-23 113.6 632 27.7
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 9.4e-23 112.8 719 27.3
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-22 111.7 633 27.3
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 2.1e-22 111.7 409 32.0
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 2.7e-22 111.3 554 27.6
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 8.0e-22 109.8 640 28.3
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 8.0e-22 109.8 748 26.5
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.8e-21 108.6 647 26.9
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.8e-21 108.6 404 30.9
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.2e-21 107.1 395 30.4
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 7.4e-20 103.2 540 27.6
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-19 102.4 631 26.9
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 2.2e-19 101.7 157 43.3
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.2e-19 101.7 728 28.0
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 8.2e-19 99.8 92 63.0
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 8.2e-19 99.8 575 26.6
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 2.4e-18 98.2 92 62.0
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 3.1e-18 97.8 699 26.2
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 4.1e-18 97.4 92 62.0
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 5.3e-18 97.1 92 60.9
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 5.3e-18 97.1 737 24.0
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 1.2e-17 95.9 302 32.5
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.6e-17 95.5 607 26.5
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 7.7e-17 93.2 651 27.3
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.3e-16 92.4 770 24.0
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.3e-16 92.4 634 28.1
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.3e-16 92.4 624 28.0
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 3.8e-16 90.9 607 26.7
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 5.0e-16 90.5 667 25.5
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 6.5e-16 90.1 279 31.5
BolC1t02156H Brassica oleracea HOM05D004189 ORTHO05D031907 1.1e-15 89.4 89 55.1
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.9e-15 88.6 299 32.4
BcaC09g50698 Brassica carinata HOM05D004189 ORTHO05D031907 4.2e-15 87.4 89 53.9
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 7.2e-15 86.7 425 30.1
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 9.4e-15 86.3 472 28.2
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 9.4e-15 86.3 118 45.8
C01p22260 Brassica napus HOM05D004189 ORTHO05D031907 1.6e-14 85.5 89 53.9
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.6e-14 85.5 268 34.0
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.6e-14 85.5 610 25.9
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 2.1e-14 85.1 421 28.0
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 2.7e-14 84.7 601 26.5
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 3.6e-14 84.3 678 25.7
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 4.7e-14 84.0 564 25.4
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 6.1e-14 83.6 704 25.1
CARHR119580 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.4e-13 82.4 70 61.4
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.8e-13 82.0 542 25.8
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 2.3e-13 81.6 608 26.0
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.3e-13 81.6 411 29.2
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 3.0e-13 81.3 290 30.3
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 3.0e-13 81.3 188 35.6
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 3.0e-13 81.3 331 31.1
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 6.8e-13 80.1 420 28.6
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 8.8e-13 79.7 120 41.7
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 7.5e-12 76.6 425 26.1
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 7.5e-12 76.6 648 23.9
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 9.7e-12 76.3 444 26.4
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 2.8e-11 74.7 191 34.6
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.7e-11 74.3 720 26.0
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 4.8e-11 73.9 645 25.6
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 4.8e-11 73.9 245 32.7
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.4e-10 72.4 630 25.9
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 3.1e-10 71.2 643 25.2
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 5.3e-10 70.5 167 32.9
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.6e-09 68.9 337 28.2
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.7e-09 68.2 219 32.9
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 3.5e-09 67.8 744 24.1
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 3.5e-09 67.8 291 29.6
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 7.7e-09 66.6 525 26.3
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 3.8e-08 64.3 262 29.4
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 3.8e-08 64.3 240 31.2
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.8e-08 64.3 183 35.0
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 6.5e-08 63.5 90 48.9
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 8.5e-08 63.2 222 32.0
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.9e-07 62.0 624 24.7
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 5.5e-07 60.5 228 27.2
BcaB05g21948 Brassica carinata HOM05D000139 ORTHO05D000103 9.4e-07 59.7 83 47.0
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.2e-06 59.3 219 32.9
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 1.6e-06 58.9 496 27.0
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 2.7e-06 58.2 147 34.7
C01p38190 Brassica napus HOM05D027100 ORTHO05D027161 6.1e-06 57.0 82 50.0
C09p27570 Brassica napus HOM05D019620 ORTHO05D024594 6.1e-06 57.0 112 37.5
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 6.1e-06 57.0 645 25.3


User provided reference genes

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