Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 2025.4 1081 100.0
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1925.2 1081 94.9
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1911.7 1081 94.1
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1870.9 1084 92.3
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1825.4 1099 89.1
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1812.3 1101 89.3
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1799.6 1098 88.8
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1796.9 1098 88.7
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1791.2 1100 88.4
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1785.8 1100 88.1
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1783.8 1101 88.0
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1783.5 1102 87.8
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1726.1 1079 85.7
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1594.7 1082 79.9
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1457.6 1118 73.2
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1454.9 1155 70.8
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1447.6 1121 71.6
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1446.8 1150 69.7
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1443.7 1156 68.2
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1441.0 1139 68.7
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1438.7 1120 71.6
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1430.6 1122 69.3
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1430.2 1141 68.3
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1429.8 1121 69.7
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1429.8 1119 71.8
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1426.8 1119 71.5
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1421.0 1151 67.6
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1417.9 1170 66.8
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1415.6 1122 70.7
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1413.7 1170 66.2
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1412.1 1155 68.7
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1411.0 1164 68.5
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1408.7 1141 67.5
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1407.1 1141 67.1
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1406.3 1154 68.7
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1405.6 1155 68.4
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1405.6 1151 67.7
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1405.2 1122 70.1
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1404.0 1148 68.9
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1402.9 1144 67.0
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1402.1 1128 67.7
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1401.7 1135 67.8
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1398.6 1142 69.4
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1398.3 1154 66.5
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1398.3 1137 67.2
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1397.5 1156 68.4
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1397.5 1141 69.2
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1396.7 1143 66.8
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1395.2 1147 66.5
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1393.6 1145 69.3
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1393.6 1145 69.3
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1391.3 1147 68.7
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1389.0 1184 64.8
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1388.6 1138 68.7
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1387.9 1150 67.4
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1381.7 1185 64.7
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1381.3 1159 67.0
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1379.8 1148 68.1
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1375.5 1131 68.0
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1375.5 1139 68.1
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1374.8 1138 68.0
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1372.8 1148 67.5
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1370.5 1152 67.2
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1367.8 1134 68.3
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1366.3 1079 71.0
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1362.8 1123 68.7
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1359.4 1173 66.0
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1357.4 1150 65.1
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1352.8 1131 67.3
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1348.6 1140 68.0
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1344.3 1150 65.8
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1341.6 1159 66.4
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1340.9 1144 66.1
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1327.8 1170 64.0
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1325.8 1140 65.4
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1324.3 1122 66.1
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1321.2 1101 67.9
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1318.9 1123 67.1
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1309.7 1134 64.9
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1305.4 1163 63.5
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1301.2 1113 66.4
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1295.0 1189 61.9
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1286.2 1146 62.7
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1280.4 1152 62.8
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1273.5 1205 60.6
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1266.1 1150 60.9
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1159.1 942 68.9
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1122.5 893 69.2
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 6.7e-311 1070.8 1027 62.0
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 9.9e-307 1057.0 1239 50.4
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 2.3e-303 1045.8 1218 52.2
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 6.6e-303 1044.3 1199 52.1
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 3.6e-293 1011.9 1112 55.2
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 5.4e-289 998.0 914 61.7
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 9.6e-286 987.3 741 69.9
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.7e-255 884.8 725 65.4
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 8.8e-247 857.8 1406 40.0
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 4.7e-232 808.9 589 72.7
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 6.1e-232 808.5 590 75.8
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 1.2e-206 724.5 517 73.1
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 3.4e-206 723.0 517 73.1
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 3.0e-202 709.9 502 74.1
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.6e-200 704.1 616 61.4
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 5.1e-186 656.0 608 59.4
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 3.8e-181 639.8 570 61.2
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.0e-170 605.1 1122 37.4
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.7e-165 587.8 564 59.0
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.2e-155 555.1 535 58.1
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 5.3e-143 513.1 537 54.7
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 8.8e-138 495.7 393 68.7
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.6e-134 484.2 459 61.2
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 7.2e-124 449.5 322 73.6
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 2.3e-122 444.5 537 50.1
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.1e-111 407.5 311 70.4
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 8.6e-101 372.9 1145 28.6
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 5.6e-100 370.2 467 49.7
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.4e-95 355.5 542 43.4
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.5e-92 345.5 1130 29.6
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.0e-89 335.1 358 52.8
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.0e-89 335.1 346 56.4
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 2.8e-83 314.7 210 77.1
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.8e-83 314.7 378 50.5
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 7.1e-79 300.1 383 51.7
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 1.2e-75 289.3 261 55.2
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 9.3e-71 273.1 250 59.2
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.2e-64 251.9 147 82.3
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-63 249.2 149 83.9
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 1.0e-61 243.0 217 62.7
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 1.3e-59 236.1 180 68.9
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.1e-58 231.5 187 66.8
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.2e-51 207.2 194 57.7
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 5.3e-50 204.1 106 94.3
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.1e-47 196.4 355 41.4
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-47 196.1 113 85.0
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 2.1e-46 192.2 352 40.9
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 3.5e-46 191.4 111 84.7
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 7.9e-46 190.3 113 83.2
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 1.3e-45 189.5 352 41.2
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 2.3e-45 188.7 352 40.6
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 1.5e-44 186.0 113 81.4
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 1.9e-44 185.7 113 81.4
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 2.6e-41 175.3 109 80.7
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 4.5e-41 174.5 106 83.0
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 9.3e-39 166.8 585 28.5
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 2.1e-38 165.6 99 82.8
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 2.1e-38 165.6 186 54.3
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.7e-38 165.2 89 89.9
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 1.8e-37 162.5 97 82.5
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 3.1e-34 151.8 82 92.7
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.4e-29 136.3 127 53.5
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.1e-28 133.3 126 57.1
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 1.1e-23 116.7 71 83.1
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 3.0e-21 108.6 75 73.3
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 8.8e-21 107.1 75 72.0
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 7.4e-20 104.0 152 44.7
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 7.4e-20 104.0 85 62.4
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 5.3e-18 97.8 173 42.8
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.5e-17 96.3 89 57.3
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 2.1e-06 59.3 55 60.0


User provided reference genes

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