Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 0.0e+00 1109.4 547 100.0
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 1.5e-274 949.1 551 84.0
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 5.6e-274 947.2 550 84.4
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 2.6e-263 911.8 546 82.6
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 1.1e-258 896.3 546 81.0
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 1.3e-251 872.8 546 78.8
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 3.9e-251 871.3 545 78.9
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 2.5e-250 868.6 543 78.6
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 8.1e-249 863.6 545 78.5
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 1.5e-242 842.8 546 76.7
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 1.5e-242 842.8 546 76.7
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 7.4e-234 813.9 547 72.8
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 3.1e-232 808.5 546 74.2
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 3.9e-227 791.6 546 72.0
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 6.3e-209 731.1 556 64.0
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 4.1e-208 728.4 556 63.8
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 1.2e-207 726.9 559 63.9
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 1.5e-207 726.5 556 63.8
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 1.5e-207 726.5 558 63.4
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 4.5e-207 724.9 559 63.7
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 1.9e-205 719.5 556 64.4
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 3.2e-205 718.8 556 62.9
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 5.5e-205 718.0 556 62.8
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 2.7e-204 715.7 556 63.1
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 4.7e-204 714.9 554 63.9
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 2.3e-203 712.6 556 63.1
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 1.1e-202 710.3 550 62.5
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.1e-202 710.3 553 62.6
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 5.7e-202 708.0 556 62.2
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 9.7e-202 707.2 556 62.4
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 6.3e-201 704.5 556 62.4
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 8.2e-201 704.1 556 62.4
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 1.1e-200 703.7 554 62.1
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 1.8e-200 703.0 562 61.6
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 5.3e-200 701.4 556 61.9
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 1.2e-199 700.3 555 62.0
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 1.6e-199 699.9 556 62.1
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 2.0e-199 699.5 551 61.9
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 4.5e-199 698.4 558 62.0
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 2.2e-198 696.0 556 62.4
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 2.9e-198 695.7 560 62.3
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 1.1e-197 693.7 555 61.6
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 1.5e-197 693.3 544 62.3
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 4.2e-197 691.8 559 62.1
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 5.5e-197 691.4 558 62.0
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 9.4e-197 690.6 559 60.6
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 2.1e-196 689.5 553 61.3
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 1.4e-195 686.8 555 61.6
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 1.4e-195 686.8 546 61.7
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 4.0e-195 685.3 559 61.0
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 5.2e-195 684.9 556 62.2
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 3.3e-194 682.2 558 60.6
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 7.5e-194 681.0 551 61.2
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 6.3e-193 677.9 562 60.7
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 2.7e-191 672.5 543 61.5
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 3.5e-191 672.2 553 59.9
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 2.2e-190 669.5 595 57.0
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 2.9e-190 669.1 552 59.6
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 6.5e-190 667.9 590 58.1
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 5.5e-189 664.8 561 58.3
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 2.3e-187 659.4 560 60.5
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 5.7e-186 654.8 575 57.7
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 9.8e-186 654.1 596 56.4
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 1.7e-185 653.3 534 60.1
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 1.1e-184 650.6 632 54.4
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 2.4e-184 649.4 518 62.5
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 7.0e-184 647.9 555 58.0
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 7.7e-183 644.4 555 57.7
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.0e-182 644.0 556 59.9
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.7e-182 643.3 556 59.7
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 1.1e-181 640.6 607 55.5
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 3.2e-181 639.0 519 62.4
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 2.1e-180 636.3 550 59.8
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 4.0e-179 632.1 555 57.8
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 6.8e-179 631.3 537 58.8
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 9.8e-178 627.5 535 59.3
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 2.4e-176 622.9 546 57.5
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 5.4e-176 621.7 557 57.1
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 7.0e-176 621.3 553 57.3
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 9.2e-176 620.9 501 61.9
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 2.0e-175 619.8 505 60.8
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 5.0e-174 615.1 562 58.0
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 1.2e-172 610.5 537 58.8
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 5.7e-170 601.7 564 56.6
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 2.9e-169 599.4 486 62.1
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 3.7e-169 599.0 486 63.0
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 5.6e-165 585.1 553 54.4
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 7.3e-165 584.7 550 55.6
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 6.2e-164 581.6 549 52.8
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 1.2e-162 577.4 535 55.9
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 1.6e-159 567.0 484 59.7
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 5.0e-158 562.0 648 49.5
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 1.1e-155 554.3 618 48.9
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 4.9e-153 545.4 573 50.8
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 4.1e-152 542.3 564 52.8
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 8.6e-142 508.1 518 51.7
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 9.6e-125 451.4 380 60.5
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 5.1e-118 429.1 487 48.7
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 4.9e-113 412.5 571 42.7
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 5.5e-104 382.5 454 44.9
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.3e-97 361.3 352 52.0
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 5.0e-89 332.8 233 68.2
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 3.6e-87 326.6 448 44.0
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 2.7e-71 273.9 205 68.3
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 9.1e-67 258.8 243 50.6
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-61 240.0 379 37.7
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.8e-51 208.0 170 59.4
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 4.6e-50 203.4 249 47.0
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 1.3e-28 132.1 156 48.1
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 9.2e-27 125.9 112 52.7
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 2.0e-21 108.2 79 57.0
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 2.6e-21 107.8 69 65.2
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 1.7e-12 78.6 54 68.5
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.7e-12 78.6 94 46.8
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 3.8e-12 77.4 137 27.0
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 3.0e-09 67.8 427 22.7
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 8.7e-09 66.2 442 24.0
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 8.7e-09 66.2 378 22.8
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 8.7e-09 66.2 292 26.4
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 2.5e-08 64.7 389 23.4
Potri.006G139900 Populus trichocarpa HOM05D000173 ORTHO05D000316 2.5e-08 64.7 411 21.7
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 3.3e-08 64.3 391 24.8
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 4.3e-08 63.9 378 24.1
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 4.3e-08 63.9 383 24.5
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 4.3e-08 63.9 389 23.7
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 7.4e-08 63.2 369 24.4
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 7.4e-08 63.2 379 22.4
Duzib150G1369 Durio zibethinus HOM05D000173 ORTHO05D004400 1.3e-07 62.4 402 23.4
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 1.6e-07 62.0 381 24.4
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 2.1e-07 61.6 289 25.3
Psat4g222600 Pisum sativum HOM05D000173 ORTHO05D004400 2.1e-07 61.6 303 24.8
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 2.8e-07 61.2 369 23.0
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 2.8e-07 61.2 356 23.0
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 3.7e-07 60.8 356 24.7
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 3.7e-07 60.8 443 23.7
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 3.7e-07 60.8 378 22.5
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 3.7e-07 60.8 302 24.2
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 3.7e-07 60.8 445 22.5
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 3.7e-07 60.8 442 22.9
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 4.8e-07 60.5 372 23.4
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 4.8e-07 60.5 302 25.5
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 4.8e-07 60.5 390 23.6
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 4.8e-07 60.5 369 22.8
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 4.8e-07 60.5 302 25.5
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 4.8e-07 60.5 380 23.2
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 4.8e-07 60.5 303 24.8
TWI15G1235 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 4.8e-07 60.5 300 25.7
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 6.2e-07 60.1 361 23.0
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 6.2e-07 60.1 303 25.1
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 6.2e-07 60.1 303 24.8
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 6.2e-07 60.1 301 26.2
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 6.2e-07 60.1 455 22.6
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 8.1e-07 59.7 393 23.9
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 1.1e-06 59.3 307 24.8
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 1.1e-06 59.3 448 22.8
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 1.1e-06 59.3 383 23.8
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 1.1e-06 59.3 427 22.7
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 1.4e-06 58.9 305 25.6
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 1.4e-06 58.9 296 24.0
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 1.4e-06 58.9 441 22.7
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 1.4e-06 58.9 369 22.8
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 1.8e-06 58.5 289 24.9
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 1.8e-06 58.5 378 22.0
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 1.8e-06 58.5 455 22.4
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 1.8e-06 58.5 383 23.0
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 2.4e-06 58.2 71 40.8
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 2.4e-06 58.2 38 63.2
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 2.4e-06 58.2 302 25.2
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 2.4e-06 58.2 302 25.2
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 3.1e-06 57.8 291 24.1
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 3.1e-06 57.8 289 25.3
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 4.0e-06 57.4 289 24.9
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 4.0e-06 57.4 383 21.9
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 5.3e-06 57.0 428 23.1
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 6.9e-06 56.6 305 23.9
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 6.9e-06 56.6 293 24.6
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 6.9e-06 56.6 292 23.6
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 6.9e-06 56.6 378 23.5
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 6.9e-06 56.6 302 25.2
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 9.0e-06 56.2 32 81.2
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 9.0e-06 56.2 433 23.1


User provided reference genes

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