Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 0.0e+00 1540.8 787 100.0
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 0.0e+00 1111.3 789 76.8
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 5.0e-308 1060.8 815 73.5
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 4.7e-290 1001.1 810 71.1
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 3.2e-238 828.9 863 59.3
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 5.1e-236 821.6 797 62.9
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 7.3e-235 817.8 797 62.9
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 4.8e-234 815.1 797 62.7
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.9e-230 803.1 806 60.4
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 2.5e-214 749.6 802 57.9
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 3.2e-214 749.2 802 58.0
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 2.6e-200 703.0 830 55.9
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 1.7e-167 594.0 475 69.5
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 4.2e-105 386.7 736 39.8
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 4.0e-100 370.2 837 34.5
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 5.8e-99 366.3 867 34.9
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.1e-97 362.1 773 36.2
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.9e-97 361.3 855 35.9
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 2.7e-96 357.5 737 37.2
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 4.6e-96 356.7 731 36.7
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 4.6e-96 356.7 756 35.7
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 6.3e-93 346.3 752 35.5
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 8.2e-93 345.9 762 35.2
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 4.1e-92 343.6 738 36.0
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 5.3e-92 343.2 726 36.2
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.2e-91 342.0 728 38.0
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 1.7e-90 338.2 892 33.2
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.5e-90 336.3 792 33.3
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.4e-89 335.1 736 35.6
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.9e-89 334.7 796 33.3
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 2.5e-89 334.3 746 34.9
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 7.2e-89 332.8 771 33.7
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 9.4e-89 332.4 773 34.2
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 4.6e-88 330.1 833 33.0
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.7e-87 326.2 771 33.3
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.5e-86 325.1 806 32.4
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 3.3e-86 323.9 758 34.3
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 2.2e-85 321.2 888 32.2
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.8e-85 320.1 755 34.2
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 4.8e-85 320.1 715 32.9
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 6.3e-85 319.7 776 35.3
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 6.3e-85 319.7 778 35.3
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 8.2e-85 319.3 887 33.4
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.9e-84 316.2 769 32.6
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 9.1e-84 315.8 768 34.4
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.2e-83 315.5 761 33.4
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.7e-82 311.6 785 32.6
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.9e-82 310.8 953 31.0
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 1.1e-81 308.9 774 34.4
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 3.2e-81 307.4 790 31.1
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 3.2e-81 307.4 767 32.7
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 9.4e-81 305.8 889 31.5
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.4e-79 302.0 804 32.6
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.8e-79 301.6 799 33.7
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 1.8e-79 301.6 833 32.1
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.8e-79 301.6 737 35.7
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 2.3e-79 301.2 817 32.9
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 3.0e-79 300.8 752 32.7
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 1.5e-78 298.5 800 31.6
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 7.4e-78 296.2 760 33.9
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 3.7e-77 293.9 830 32.5
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 1.8e-76 291.6 824 30.6
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 2.4e-76 291.2 864 32.3
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 5.3e-76 290.0 657 31.8
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 9.1e-76 289.3 756 32.7
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 2.0e-75 288.1 784 31.1
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.5e-75 287.3 614 35.2
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.3e-74 285.4 793 31.7
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 6.5e-74 283.1 785 32.0
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 1.6e-72 278.5 755 32.5
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 2.1e-72 278.1 742 30.2
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 2.3e-71 274.6 881 30.0
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.0e-70 271.6 803 30.9
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 4.4e-70 270.4 814 31.2
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 5.7e-70 270.0 753 31.2
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 1.3e-69 268.9 756 30.7
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 4.8e-69 266.9 683 33.2
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 6.3e-69 266.5 865 30.6
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 1.8e-68 265.0 763 30.9
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 5.9e-67 260.0 760 30.4
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 1.0e-66 259.2 879 30.1
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 6.5e-66 256.5 753 30.4
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 8.5e-66 256.1 795 30.6
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 4.2e-65 253.8 234 58.5
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 4.2e-65 253.8 696 31.8
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 1.0e-63 249.2 834 29.3
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 6.8e-63 246.5 841 29.8
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 9.7e-62 242.7 919 28.2
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.3e-58 232.3 761 30.1
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 3.2e-57 227.6 680 29.9
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.0e-55 222.6 669 32.3
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 6.8e-55 219.9 732 30.5
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 4.1e-52 210.7 350 38.3
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.3e-45 189.1 781 26.1
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.4e-44 184.9 274 43.8
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.5e-43 181.0 500 30.4
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 4.5e-43 180.6 587 30.3
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.2e-40 172.6 261 40.2
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 2.1e-40 171.8 603 28.2
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 2.6e-38 164.9 479 31.1
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.7e-37 161.0 400 32.5
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.4e-36 159.1 141 58.9
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.6e-35 155.6 697 27.8
AL8G16650 Arabidopsis lyrata HOM05D005259 ORTHO05D006402 2.7e-35 154.8 187 57.8
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 1.3e-34 152.5 666 26.4
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 2.5e-33 148.3 418 29.9
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 4.3e-33 147.5 613 29.0
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.1e-31 141.4 142 52.8
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 9.8e-30 136.3 283 40.3
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.9e-28 132.1 141 48.2
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 5.4e-28 130.6 139 48.9
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.6e-27 129.0 140 48.6
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 2.7e-27 128.3 356 31.5
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 4.3e-25 120.9 134 51.5
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 5.6e-25 120.6 139 44.6
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 3.6e-24 117.9 138 45.7
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.0e-23 114.4 342 30.7
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 1.2e-22 112.8 133 46.6
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 3.4e-22 111.3 402 30.6
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 4.9e-21 107.5 282 35.1
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.9e-20 105.5 703 23.8
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 5.4e-20 104.0 631 24.4
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 2.1e-19 102.1 164 43.3
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 2.1e-19 102.1 98 50.0
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 6.0e-19 100.5 135 43.0
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.1e-15 89.7 360 23.1
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 6.8e-15 87.0 151 35.1
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 2.0e-14 85.5 155 41.3
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.4e-14 84.7 381 22.3
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 7.6e-14 83.6 58 63.8
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 6.4e-13 80.5 291 27.5
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.1e-12 79.7 444 25.5
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 6.0e-11 73.9 66 59.1
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 8.7e-10 70.1 336 25.9
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 2.0e-06 58.9 337 23.1


User provided reference genes

Program Settings