Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0415 Capsella rubella HOM05D003480 ORTHO05D004425 9.3e-212 740.0 376 100.0
AT5G44320 Arabidopsis thaliana HOM05D003480 ORTHO05D004425 4.9e-197 691.0 401 88.3
AL8G15580 Arabidopsis lyrata HOM05D003480 ORTHO05D004425 7.1e-196 687.2 401 88.3
Sp2g09160 Schrenkiella parvula HOM05D003480 ORTHO05D004425 6.1e-195 684.1 402 87.6
CARHR178810 Cardamine hirsuta HOM05D003480 ORTHO05D004425 9.7e-193 676.8 403 87.6
BcaC06g31627 Brassica carinata HOM05D003480 ORTHO05D004425 1.6e-192 676.0 402 86.3
Thhalv10003390m.g Eutrema salsugineum HOM05D003480 ORTHO05D004425 1.6e-192 676.0 402 86.6
BraA06t27601Z Brassica rapa HOM05D003480 ORTHO05D004425 3.8e-189 664.8 401 85.5
A09p21050 Brassica napus HOM05D003480 ORTHO05D004425 1.9e-188 662.5 401 86.3
C09p26790 Brassica napus HOM05D003480 ORTHO05D004425 1.9e-188 662.5 401 86.3
BcaB07g30957 Brassica carinata HOM05D003480 ORTHO05D004425 7.2e-188 660.6 401 86.0
BolC9t55567H Brassica oleracea HOM05D003480 ORTHO05D004425 9.4e-188 660.2 401 86.0
BraA09t37704Z Brassica rapa HOM05D003480 ORTHO05D004425 2.1e-187 659.1 401 85.8
BcaC06g31628 Brassica carinata HOM05D003480 ORTHO05D004425 4.6e-187 657.9 403 84.4
C07p27040 Brassica napus HOM05D003480 ORTHO05D004425 4.6e-187 657.9 403 84.6
BolC7t43234H Brassica oleracea HOM05D003480 ORTHO05D004425 4.6e-187 657.9 403 84.4
BcaB07g30952 Brassica carinata HOM05D003480 ORTHO05D004425 1.0e-186 656.8 401 84.5
BcaC06g34569 Brassica carinata HOM05D003480 ORTHO05D004425 1.4e-186 656.4 403 84.4
A06p47300 Brassica napus HOM05D003480 ORTHO05D004425 2.0e-185 652.5 401 84.3
BcaC04g21840 Brassica carinata HOM05D003480 ORTHO05D004425 3.2e-180 635.2 401 83.8
Aa31LG6G3040 Aethionema arabicum HOM05D003480 ORTHO05D004425 1.6e-179 632.9 401 82.8
CARHR227530 Cardamine hirsuta HOM05D003480 ORTHO05D004425 3.5e-174 615.1 399 80.7
AT4G20980 Arabidopsis thaliana HOM05D003480 ORTHO05D004425 4.5e-174 614.8 399 81.0
Sp7g19050 Schrenkiella parvula HOM05D003480 ORTHO05D004425 7.7e-174 614.0 402 79.6
Carub.0007s2046 Capsella rubella HOM05D003480 ORTHO05D004425 2.7e-171 605.5 399 80.2
AL7G33170 Arabidopsis lyrata HOM05D003480 ORTHO05D004425 3.6e-171 605.1 399 79.9
THA.LOC104812939 Tarenaya hassleriana HOM05D003480 ORTHO05D004425 1.0e-170 603.6 402 78.6
THA.LOC104812284 Tarenaya hassleriana HOM05D003480 ORTHO05D004425 8.8e-170 600.5 403 77.7
Manes.11G028400 Manihot esculenta HOM05D003480 ORTHO05D004425 2.4e-167 592.4 402 77.1
Gorai.010G154200 Gossypium raimondii HOM05D003480 ORTHO05D004425 3.5e-166 588.6 402 76.6
Sabra04G0027700 Salix brachista HOM05D003480 ORTHO05D004425 5.9e-166 587.8 402 76.1
Potri.004G044500 Populus trichocarpa HOM05D003480 ORTHO05D004425 7.7e-166 587.4 402 76.1
Cpa.g.sc27.36 Carica papaya HOM05D003480 ORTHO05D004425 1.0e-165 587.0 396 76.5
Gohir.A10G026600 Gossypium hirsutum HOM05D003480 ORTHO05D004425 1.0e-165 587.0 400 76.5
Gorai.011G028500 Gossypium raimondii HOM05D003480 ORTHO05D004425 1.0e-165 587.0 400 76.8
QL06p052924 Quercus lobata HOM05D003480 ORTHO05D004425 1.3e-165 586.6 401 76.1
Lj6g0027126 Lotus japonicus HOM05D003480 ORTHO05D004425 1.7e-165 586.3 402 75.6
QL06p053406 Quercus lobata HOM05D003480 ORTHO05D004425 1.7e-165 586.3 401 76.1
Duzib192G0865 Durio zibethinus HOM05D003480 ORTHO05D004425 2.2e-165 585.9 402 76.1
Thecc.06G186000 Theobroma cacao HOM05D003480 ORTHO05D004425 2.9e-165 585.5 400 76.5
Gohir.A06G128300 Gossypium hirsutum HOM05D003480 ORTHO05D004425 5.0e-165 584.7 402 76.4
Sopen02g022950 Solanum pennellii HOM05D003480 ORTHO05D004425 6.5e-165 584.3 401 74.1
Ciclev10017475m.g Citrus clementina HOM05D003480 ORTHO05D004425 8.5e-165 583.9 387 77.8
COL.COLO4_31457 Corchorus olitorius HOM05D003480 ORTHO05D004425 8.5e-165 583.9 402 75.6
Dinv40570 Davidia involucrata HOM05D003480 ORTHO05D004425 8.5e-165 583.9 402 74.6
Phvul.006G184500 Phaseolus vulgaris HOM05D003480 ORTHO05D004425 8.5e-165 583.9 402 75.6
Solyc02g078120.2 Solanum lycopersicum HOM05D003480 ORTHO05D004425 1.1e-164 583.6 401 73.8
CiPaw.10G049800 Carya illinoinensis HOM05D003480 ORTHO05D004425 1.5e-164 583.2 402 74.9
Glyma.13G238200 Glycine max HOM05D003480 ORTHO05D004425 1.9e-164 582.8 402 75.1
Glyma.15G075100 Glycine max HOM05D003480 ORTHO05D004425 1.9e-164 582.8 402 75.4
Psat3g013320 Pisum sativum HOM05D003480 ORTHO05D004425 1.9e-164 582.8 402 74.4
Dinv17321 Davidia involucrata HOM05D003480 ORTHO05D004425 2.5e-164 582.4 396 76.3
Potri.011G053500 Populus trichocarpa HOM05D003480 ORTHO05D004425 2.5e-164 582.4 396 75.5
Gohir.D05G163900 Gossypium hirsutum HOM05D003480 ORTHO05D004425 4.2e-164 581.6 402 75.1
Gohir.D10G027200 Gossypium hirsutum HOM05D003480 ORTHO05D004425 4.2e-164 581.6 400 76.2
Prupe.4G048700 Prunus persica HOM05D003480 ORTHO05D004425 4.2e-164 581.6 398 75.4
Sed0021745 Sechium edule HOM05D003480 ORTHO05D004425 4.2e-164 581.6 395 75.7
Nitab4.5_0009438g0010 Nicotiana tabacum HOM05D003480 ORTHO05D004425 5.5e-164 581.3 401 74.6
Sabra11G0037300 Salix brachista HOM05D003480 ORTHO05D004425 7.2e-164 580.9 402 75.4
CiPaw.09G060800 Carya illinoinensis HOM05D003480 ORTHO05D004425 9.4e-164 580.5 394 75.1
Duzib235G0380 Durio zibethinus HOM05D003480 ORTHO05D004425 9.4e-164 580.5 402 75.9
VMungo0540G0515 Vigna mungo HOM05D003480 ORTHO05D004425 9.4e-164 580.5 402 75.9
Gorai.009G169000 Gossypium raimondii HOM05D003480 ORTHO05D004425 1.2e-163 580.1 402 74.4
Peaxi162Scf00048g00153 Petunia axillaris HOM05D003480 ORTHO05D004425 1.2e-163 580.1 401 74.6
PGSC0003DMG400029694 Solanum tuberosum HOM05D003480 ORTHO05D004425 1.2e-163 580.1 401 74.1
Ca_00342_v3 Cicer arietinum L. HOM05D003480 ORTHO05D004425 2.1e-163 579.3 402 75.1
Medtr7g111950 Medicago truncatula HOM05D003480 ORTHO05D004425 2.1e-163 579.3 406 74.6
Hma1.2p1_0673F.1_g201280 Hydrangea macrophylla HOM05D003480 ORTHO05D004425 2.7e-163 578.9 396 75.0
Hma1.2p1_1222F.1_g268180 Hydrangea macrophylla HOM05D003480 ORTHO05D004425 2.7e-163 578.9 396 75.0
EL10Ac8g19153 Beta vulgaris HOM05D003480 ORTHO05D004425 3.6e-163 578.6 396 75.3
Gohir.A05G161200 Gossypium hirsutum HOM05D003480 ORTHO05D004425 3.6e-163 578.6 402 74.6
Psat1g204440 Pisum sativum HOM05D003480 ORTHO05D004425 8.0e-163 577.4 402 74.1
Eucgr.D00614 Eucalyptus grandis HOM05D003480 ORTHO05D004425 1.4e-162 576.6 402 74.6
arahy.Tifrunner.gnm1.ann1.FXY2MK Arachis hypogaea HOM05D003480 ORTHO05D004425 4.0e-162 575.1 402 74.4
arahy.Tifrunner.gnm1.ann1.R134T8 Arachis hypogaea HOM05D003480 ORTHO05D004425 4.0e-162 575.1 402 74.4
Hund23769 Selenicereus undatus HOM05D003480 ORTHO05D004425 4.0e-162 575.1 396 74.5
Nitab4.5_0011879g0010 Nicotiana tabacum HOM05D003480 ORTHO05D004425 5.2e-162 574.7 377 76.7
PGR042G2561 Punica granatum HOM05D003480 ORTHO05D004425 5.2e-162 574.7 402 74.6
unitig_22.g5701 Utricularia gibba HOM05D003480 ORTHO05D004425 5.2e-162 574.7 394 74.6
Actinidia05643 Actinidia chinensis HOM05D003480 ORTHO05D004425 1.2e-161 573.5 402 73.9
CAN.G529.1 Capsicum annuum HOM05D003480 ORTHO05D004425 1.2e-161 573.5 401 73.1
MD05G1338100 Malus domestica HOM05D003480 ORTHO05D004425 1.2e-161 573.5 395 75.4
TWI38G1181 Tripterygium wilfordii HOM05D003480 ORTHO05D004425 1.2e-161 573.5 402 73.9
Lj1A1204T32 Lonicera japonica HOM05D003480 ORTHO05D004425 1.5e-161 573.2 396 75.3
RcHm_v2.0_Chr5g0048541 Rosa chinensis HOM05D003480 ORTHO05D004425 1.5e-161 573.2 402 74.9
TWI38G1399 Tripterygium wilfordii HOM05D003480 ORTHO05D004425 2.6e-161 572.4 402 74.1
Lalb_Chr15g0089781 Lupinus albus HOM05D003480 ORTHO05D004425 3.4e-161 572.0 402 73.4
DCAR_024898 Daucus carota HOM05D003480 ORTHO05D004425 1.3e-160 570.1 396 74.2
Sed0013036 Sechium edule HOM05D003480 ORTHO05D004425 1.3e-160 570.1 402 74.4
MSTRG.15878 Avicennia marina HOM05D003480 ORTHO05D004425 1.7e-160 569.7 396 74.2
CANSAT35G1561 Cannabis sativa HOM05D003480 ORTHO05D004425 1.7e-160 569.7 402 74.4
AUR62018061 Chenopodium quinoa HOM05D003480 ORTHO05D004425 1.7e-160 569.7 396 73.7
Haze_06432 Corylus avellana HOM05D003480 ORTHO05D004425 2.8e-160 568.9 403 73.0
AUR62015260 Chenopodium quinoa HOM05D003480 ORTHO05D004425 3.7e-160 568.5 396 73.5
Lalb_Chr20g0121821 Lupinus albus HOM05D003480 ORTHO05D004425 3.7e-160 568.5 404 72.5
PSO541G6261 Papaver somniferum HOM05D003480 ORTHO05D004425 4.8e-160 568.2 395 73.7
PSO675G1395 Papaver somniferum HOM05D003480 ORTHO05D004425 4.8e-160 568.2 395 73.7
AUR62036107 Chenopodium quinoa HOM05D003480 ORTHO05D004425 1.1e-159 567.0 397 73.3
vmacro03877 Vaccinium macrocarpon HOM05D003480 ORTHO05D004425 1.1e-159 567.0 402 72.6
TPR.G16497 Trifolium pratense HOM05D003480 ORTHO05D004425 1.4e-159 566.6 402 72.6
Rhsim13G0138500 Rhododendron simsii HOM05D003480 ORTHO05D004425 1.8e-159 566.2 385 74.8
AUR62019528 Chenopodium quinoa HOM05D003480 ORTHO05D004425 2.4e-159 565.8 396 73.2
ClCG01G025340 Citrullus lanatus HOM05D003480 ORTHO05D004425 2.4e-159 565.8 365 78.6
CsaV3_6G052600 Cucumis sativus L. HOM05D003480 ORTHO05D004425 2.4e-159 565.8 365 78.6
CSS0021711 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D004425 4.1e-159 565.1 396 73.7
FAN18G0389 Fragaria x ananassa HOM05D003480 ORTHO05D004425 5.4e-159 564.7 402 73.6
Manes.04G137900 Manihot esculenta HOM05D003480 ORTHO05D004425 5.4e-159 564.7 402 73.6
Nn1g04114 Nelumbo nucifera HOM05D003480 ORTHO05D004425 7.0e-159 564.3 398 73.1
FvH4_5g27490 Fragaria vesca HOM05D003480 ORTHO05D004425 9.1e-159 563.9 402 73.6
SGA_v2.0_scaffold49G18296 Striga asiatica HOM05D003480 ORTHO05D004425 1.2e-158 563.5 401 72.1
Nn1g06510 Nelumbo nucifera HOM05D003480 ORTHO05D004425 2.0e-158 562.8 381 75.1
MBI10_g03527_MAGBIO Magnolia biondii HOM05D003480 ORTHO05D004425 2.7e-158 562.4 381 76.6
Migut.H01483 Erythranthe guttata HOM05D003480 ORTHO05D004425 3.5e-158 562.0 401 72.3
FAN13G0993 Fragaria x ananassa HOM05D003480 ORTHO05D004425 4.5e-158 561.6 402 73.4
HanXRQChr01g0003861 Helianthus annuus HOM05D003480 ORTHO05D004425 4.5e-158 561.6 385 73.8
FAN08G1211 Fragaria x ananassa HOM05D003480 ORTHO05D004425 5.9e-158 561.2 402 73.4
FAN04G1437 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.3e-157 560.1 387 73.9
Sc17g0006150 Simmondsia chinensis HOM05D003480 ORTHO05D004425 1.3e-157 560.1 396 74.7
Aqoxy4G02656 Aquilegia oxysepala HOM05D003480 ORTHO05D004425 1.7e-157 559.7 396 72.5
ECA248G3601 Erigeron canadensis HOM05D003480 ORTHO05D004425 1.7e-157 559.7 378 74.3
Lsat_1_v5_gn_1_126340 Lactuca sativa HOM05D003480 ORTHO05D004425 8.5e-157 557.4 396 71.5
Migut.M01135 Erythranthe guttata HOM05D003480 ORTHO05D004425 1.1e-156 557.0 396 72.0
PSO210G2017 Papaver somniferum HOM05D003480 ORTHO05D004425 2.5e-156 555.8 384 74.2
TAR626G0815 Trochodendron aralioides HOM05D003480 ORTHO05D004425 7.2e-156 554.3 393 72.0
SGA_v2.0_scaffold159G37637 Striga asiatica HOM05D003480 ORTHO05D004425 2.7e-155 552.4 401 70.6
Ah.12g058540 Amaranthus hybridus HOM05D003480 ORTHO05D004425 3.6e-155 552.0 396 71.7
CDE06G2702 Ceratophyllum demersum HOM05D003480 ORTHO05D004425 1.0e-154 550.4 396 71.2
PSO210G2817 Papaver somniferum HOM05D003480 ORTHO05D004425 1.4e-154 550.1 384 74.0
ATR0665G336 Amborella trichopoda HOM05D003480 ORTHO05D004425 4.0e-154 548.5 394 72.1
FvH4_3g37950 Fragaria vesca HOM05D003480 ORTHO05D004425 1.2e-153 547.0 405 72.1
FAN11G2816 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.2e-153 547.0 405 72.1
FAN21G3883 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.2e-153 547.0 405 71.6
HanXRQChr16g0516221 Helianthus annuus HOM05D003480 ORTHO05D004425 3.4e-153 545.4 390 70.0
FAN16G2584 Fragaria x ananassa HOM05D003480 ORTHO05D004425 9.8e-153 543.9 405 71.4
CSS0026003 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D004425 1.8e-151 539.7 396 71.5
SEGI_12249 Sequoiadendron giganteum HOM05D003480 ORTHO05D004425 2.7e-150 535.8 368 72.6
ATR0665G315 Amborella trichopoda HOM05D003480 ORTHO05D004425 1.7e-149 533.1 372 72.8
SHI13762 Sapria himalayana HOM05D003480 ORTHO05D004425 6.6e-149 531.2 380 70.5
Os05g0566500 Oryza sativa ssp. japonica HOM05D003480 ORTHO05D004425 1.8e-146 523.1 388 69.1
SMO169G0124 Selaginella moellendorffii HOM05D003480 ORTHO05D004425 1.7e-144 516.5 368 71.2
SMO298G0032 Selaginella moellendorffii HOM05D003480 ORTHO05D004425 1.7e-144 516.5 368 71.2
Zm00001eb157540 Zea mays HOM05D003480 ORTHO05D004425 1.7e-144 516.5 405 67.2
Atru.chr10.1865 Acer truncatum HOM05D003480 ORTHO05D004425 2.9e-144 515.8 401 69.1
CAN.G413.27 Capsicum annuum HOM05D003480 ORTHO05D004425 9.2e-143 510.8 401 67.6
Pp3c3_3440 Physcomitrium patens HOM05D003480 ORTHO05D004425 2.7e-142 509.2 371 67.1
Pp3c13_8400 Physcomitrium patens HOM05D003480 ORTHO05D004425 3.5e-142 508.8 371 67.1
Zm00001eb296070 Zea mays HOM05D003480 ORTHO05D004425 7.8e-142 507.7 408 65.9
TPR.G1669 Trifolium pratense HOM05D003480 ORTHO05D004425 1.0e-141 507.3 376 69.7
TAR375G0365 Trochodendron aralioides HOM05D003480 ORTHO05D004425 8.9e-138 494.2 394 66.5
Cfa014799 Carpinus fangiana HOM05D003480 ORTHO05D004425 2.0e-129 466.5 332 72.6
AagrBONN_evm.TU.Sc2ySwM_117.1925 Anthoceros agrestis HOM05D003480 ORTHO05D004425 4.4e-129 465.3 379 61.7
Mapoly0112s0008 Marchantia polymorpha HOM05D003480 ORTHO05D004425 1.4e-127 460.3 386 61.7
Pp3c12_8550 Physcomitrium patens HOM05D003480 ORTHO05D004425 4.1e-127 458.8 370 62.2
CBR_g20021 Chara braunii HOM05D003480 ORTHO05D004425 1.5e-121 440.3 369 60.4
unitig_8.g3643 Utricularia gibba HOM05D003480 ORTHO05D004425 2.0e-121 439.9 307 72.0
CBR_g8049 Chara braunii HOM05D003480 ORTHO05D004425 8.4e-120 434.5 369 60.2
Gohir.D06G132300 Gossypium hirsutum HOM05D003480 ORTHO05D004425 1.3e-112 410.6 245 82.4
vmacro03873 Vaccinium macrocarpon HOM05D003480 ORTHO05D004425 2.4e-111 406.4 349 63.0
Actinidia16555 Actinidia chinensis HOM05D003480 ORTHO05D004425 3.5e-110 402.5 401 58.4
TAR627G1095 Trochodendron aralioides HOM05D003480 ORTHO05D004425 3.9e-101 372.5 396 53.5
CDE07G0331 Ceratophyllum demersum HOM05D003480 ORTHO05D004425 8.4e-96 354.8 378 53.2
Haze_26349 Corylus avellana HOM05D003480 ORTHO05D004425 2.5e-87 326.6 402 45.8
MCO16G041 Micromonas commoda HOM05D003480 ORTHO05D004425 3.7e-83 312.8 366 44.8
PRCOL_00004325 Prasinoderma coloniale HOM05D003480 ORTHO05D004425 1.5e-81 307.4 359 46.5
C02p44940 Brassica napus HOM05D003480 ORTHO05D004425 2.6e-81 306.6 324 56.5
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 3.1e-74 283.1 211 68.7
Cfa024070 Carpinus fangiana HOM05D003480 ORTHO05D004425 8.5e-72 275.0 385 43.6
Cc02_g13470 Coffea canephora HOM05D003480 ORTHO05D004425 5.5e-71 272.3 171 79.5
Cre05.g242300 Chlamydomonas reinhardtii HOM05D003480 ORTHO05D004425 1.8e-69 267.3 397 39.5
AagrBONN_evm.TU.Sc2ySwM_228.3152 Anthoceros agrestis HOM05D003480 ORTHO05D004425 2.7e-62 243.4 159 76.7
CAN.G320.7 Capsicum annuum HOM05D003480 ORTHO05D004425 7.5e-52 208.8 156 66.7
HPP92_010058 Vanilla planifolia HOM05D003480 ORTHO05D004425 1.4e-37 161.4 101 76.2
GSVIVG01002790001 Vitis vinifera HOM05D003480 ORTHO05D004425 2.8e-35 153.7 235 43.0
A02p28360 Brassica napus HOM05D003480 ORTHO05D004425 4.7e-30 136.3 104 73.1
BraA02t07873Z Brassica rapa HOM05D003480 ORTHO05D004425 4.7e-30 136.3 104 73.1
Haze_19911 Corylus avellana HOM05D000228 ORTHO05D005112 1.7e-27 127.9 94 67.0
SGA_v2.0_scaffold16G07757 Striga asiatica HOM05D003480 ORTHO05D004425 4.6e-25 119.8 140 49.3
Lsat_1_v5_gn_4_53780 Lactuca sativa HOM05D003480 ORTHO05D004425 1.1e-23 115.2 80 71.2
Oeu029359.1 Olea europaea HOM05D001843 ORTHO05D008358 4.7e-22 109.8 96 60.4
BcaC03g16652 Brassica carinata HOM05D003480 ORTHO05D004425 1.3e-19 101.7 104 59.6
unitig_8.g3642 Utricularia gibba HOM05D003480 ORTHO05D004425 9.5e-15 85.5 51 76.5
SEGI_11253 Sequoiadendron giganteum HOM05D003480 ORTHO05D029240 2.6e-12 77.4 52 61.5
SEGI_19488 Sequoiadendron giganteum HOM05D003480 ORTHO05D029240 2.6e-12 77.4 52 61.5
Medtr2g013930 Medicago truncatula HOM05D003480 ORTHO05D258128 9.8e-12 75.5 162 38.3
Dinv13172 Davidia involucrata HOM05D003480 ORTHO05D029240 4.6e-09 66.6 48 60.4


User provided reference genes

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