Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 1.4e-223 779.2 379 100.0
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.7e-219 765.0 379 97.4
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.8e-218 762.3 379 97.1
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 4.3e-217 757.7 379 97.1
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 3.7e-208 728.0 382 93.2
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 3.7e-208 728.0 382 93.5
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 8.2e-208 726.9 382 93.2
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 3.1e-207 724.9 382 92.4
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 3.1e-207 724.9 382 92.4
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 5.3e-207 724.2 382 93.2
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 5.3e-207 724.2 382 93.2
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 5.3e-207 724.2 382 93.2
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 1.5e-206 722.6 382 92.7
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 7.7e-206 720.3 382 92.7
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 1.3e-205 719.5 382 92.7
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 2.1e-203 712.2 383 91.4
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 7.4e-201 703.7 358 95.8
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 4.8e-192 674.5 412 82.5
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 1.5e-188 662.9 390 85.1
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 2.5e-180 635.6 374 79.9
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 5.5e-180 634.4 370 87.3
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 5.5e-180 634.4 382 79.6
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 7.2e-180 634.0 374 80.5
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 9.5e-180 633.6 329 95.1
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 4.7e-179 631.3 374 79.9
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 1.0e-178 630.2 377 79.3
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 1.0e-178 630.2 374 78.9
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 6.8e-178 627.5 380 84.7
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 6.8e-178 627.5 377 79.3
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 3.4e-177 625.2 377 77.7
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 2.2e-176 622.5 373 78.8
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 4.1e-175 618.2 374 77.5
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 4.1e-175 618.2 374 77.5
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 1.2e-174 616.7 373 76.9
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 1.6e-174 616.3 376 77.9
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.7e-174 615.5 372 78.8
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 7.8e-174 614.0 374 76.2
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 1.7e-173 612.8 376 75.3
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 1.7e-173 612.8 374 77.0
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 1.7e-173 612.8 371 77.9
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 3.8e-173 611.7 374 76.5
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 2.5e-172 609.0 374 77.0
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 1.6e-171 606.3 374 77.0
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 2.8e-171 605.5 375 76.5
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 3.6e-171 605.1 374 77.5
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 8.0e-171 604.0 374 76.7
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 1.8e-170 602.8 337 89.0
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.8e-170 602.8 374 76.5
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 4.0e-170 601.7 380 75.5
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 5.2e-170 601.3 377 79.3
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 6.8e-170 600.9 371 76.3
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 8.9e-170 600.5 376 76.6
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 2.0e-169 599.4 378 75.9
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 9.8e-169 597.0 376 74.2
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 6.4e-168 594.3 374 74.3
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 8.3e-168 594.0 413 69.5
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 5.4e-167 591.3 372 74.5
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 5.4e-167 591.3 374 74.1
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 9.2e-167 590.5 374 81.0
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 7.8e-166 587.4 380 75.3
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 1.7e-165 586.3 370 75.7
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 1.1e-164 583.6 374 73.5
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 2.1e-163 579.3 373 74.0
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 2.1e-163 579.3 343 79.9
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 8.0e-163 577.4 382 73.0
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 5.2e-162 574.7 380 73.2
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 1.5e-161 573.2 374 73.3
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 2.6e-161 572.4 372 72.3
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 1.3e-160 570.1 395 71.4
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 1.1e-159 567.0 371 70.1
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 2.7e-158 562.4 374 71.4
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 4.6e-158 561.6 369 72.1
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 8.6e-157 557.4 379 72.0
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 5.6e-156 554.7 338 78.1
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.1e-154 548.9 348 75.3
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 8.9e-154 547.4 372 70.4
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 2.0e-153 546.2 372 71.0
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 2.0e-153 546.2 368 69.8
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 6.4e-152 541.2 372 70.4
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 2.1e-150 536.2 370 71.9
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 2.1e-150 536.2 321 78.2
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 2.1e-150 536.2 337 76.0
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 1.7e-149 533.1 380 67.9
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.9e-148 529.6 375 69.3
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 3.1e-146 522.3 373 67.8
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 2.6e-145 519.2 282 84.4
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 2.6e-145 519.2 378 67.5
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.3e-144 516.9 371 67.9
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 2.9e-144 515.8 370 67.6
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 6.4e-144 514.6 372 67.5
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 4.1e-143 511.9 371 66.8
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 5.4e-143 511.5 372 66.1
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 9.2e-143 510.8 381 65.9
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 1.0e-141 507.3 377 66.8
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 8.6e-141 504.2 377 66.3
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 9.6e-140 500.7 377 66.6
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.2e-139 500.4 374 65.0
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 3.6e-139 498.8 377 65.8
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 6.2e-139 498.0 372 64.8
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 1.1e-138 497.3 377 66.0
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 2.4e-138 496.1 377 60.5
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 2.0e-137 493.0 377 65.3
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 3.8e-136 488.8 377 64.7
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 4.9e-136 488.4 377 64.5
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 2.4e-135 486.1 377 65.3
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 2.4e-135 486.1 377 65.3
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 3.2e-135 485.7 254 88.2
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 7.1e-135 484.6 349 69.9
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 3.3e-132 475.7 374 63.4
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 7.6e-129 464.5 385 65.2
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 7.6e-129 464.5 258 83.3
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 3.5e-126 455.7 364 61.3
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 3.5e-126 455.7 377 61.5
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 3.3e-124 449.1 386 55.4
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 1.2e-121 440.7 254 78.0
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.0e-121 439.9 384 55.2
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 8.4e-120 434.5 374 61.0
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.4e-119 433.7 386 53.6
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 3.2e-119 432.6 282 72.7
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.8e-117 426.8 380 55.0
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.8e-106 390.2 305 65.2
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 6.5e-104 381.7 224 78.6
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.0e-93 347.8 318 56.6
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 3.1e-82 309.7 530 36.0
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 5.0e-80 302.4 147 95.9
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.6e-78 297.4 144 95.8
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 6.1e-70 268.9 215 61.9
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 6.1e-70 268.9 211 63.5
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 4.4e-68 262.7 272 51.8
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 3.5e-65 253.1 218 61.9
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 2.9e-64 250.0 369 38.5
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 4.7e-54 216.1 135 73.3
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 1.5e-52 211.1 147 70.7
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 7.0e-50 202.2 145 68.3
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 7.8e-41 172.2 286 33.6
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 7.8e-41 172.2 110 70.9
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 3.6e-38 163.3 139 56.8
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.1e-34 151.8 92 72.8
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 1.4e-29 134.8 282 30.1
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 1.0e-24 118.6 146 46.6
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 1.7e-24 117.9 57 89.5
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 6.2e-22 109.4 59 83.1
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.8e-21 107.8 53 94.3
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 3.1e-21 107.1 66 74.2
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 3.6e-14 83.6 57 73.7
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 8.1e-14 82.4 78 53.8
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 4.5e-12 76.6 48 77.1
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 6.2e-06 56.2 37 64.9


User provided reference genes

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