Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 0.0e+00 1226.1 610 100.0
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 0.0e+00 1195.3 610 97.5
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 0.0e+00 1189.9 610 96.7
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 0.0e+00 1167.5 615 95.1
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1155.2 613 94.6
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 0.0e+00 1154.0 610 94.3
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 0.0e+00 1148.7 610 94.4
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1144.0 612 94.4
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 0.0e+00 1144.0 612 94.4
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1143.6 612 93.8
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1136.7 615 93.3
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1136.3 612 93.5
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 0.0e+00 1136.3 612 93.5
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1134.4 612 93.3
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1134.0 612 93.3
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 0.0e+00 1129.8 614 93.0
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 0.0e+00 1123.2 626 91.1
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 0.0e+00 1120.5 616 90.7
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 0.0e+00 1082.0 616 87.7
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.3e-311 1072.4 616 88.0
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 8.6e-300 1033.1 615 83.6
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 8.6e-300 1033.1 611 84.0
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.9e-294 1015.4 610 83.1
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 4.1e-294 1014.2 618 82.5
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.2e-293 1012.7 617 81.5
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.6e-293 1012.3 618 82.8
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 1.3e-292 1009.2 612 82.8
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.1e-291 1006.1 611 81.8
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 1.5e-291 1005.7 611 82.5
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.5e-291 1005.7 617 81.8
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 2.5e-291 1005.0 621 80.7
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.3e-291 1003.4 612 81.7
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 7.3e-291 1003.4 611 81.7
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 9.5e-291 1003.0 616 79.9
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 9.5e-291 1003.0 617 81.0
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 622 81.0
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 616 79.9
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 2.1e-290 1001.9 614 80.8
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 618 81.1
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 6.2e-290 1000.3 619 80.9
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 1.1e-289 999.6 612 81.5
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.1e-289 999.6 616 81.2
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.4e-289 999.2 624 80.6
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.4e-289 999.2 623 80.4
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.8e-289 998.8 618 80.9
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 1.8e-289 998.8 621 81.6
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 2.4e-289 998.4 596 82.7
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.4e-289 998.4 614 80.6
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 3.1e-289 998.0 617 80.9
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 1.2e-288 996.1 582 84.0
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.2e-288 996.1 618 81.1
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 1.2e-288 996.1 611 80.9
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.5e-288 995.7 614 80.1
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.5e-288 995.7 614 80.5
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 3.4e-288 994.6 610 80.7
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 4.4e-288 994.2 622 80.2
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 9.9e-288 993.0 585 83.8
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.3e-287 992.6 619 80.1
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.3e-287 992.6 612 80.7
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.3e-287 992.6 612 80.7
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.7e-287 992.3 610 80.8
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 2.2e-287 991.9 651 78.0
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 2.2e-287 991.9 612 80.7
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 2.2e-287 991.9 625 79.0
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 4.9e-287 990.7 614 80.5
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 1.1e-286 989.6 621 79.5
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.1e-286 989.6 610 80.7
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 1.4e-286 989.2 610 79.8
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 1.9e-286 988.8 626 79.6
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 2.4e-286 988.4 618 79.0
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 4.2e-286 987.6 621 79.9
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.6e-285 985.7 614 80.3
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.7e-285 984.9 575 83.1
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 1.3e-284 982.6 612 80.7
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.3e-284 981.9 566 85.0
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 6.6e-284 980.3 616 79.9
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 1.1e-283 979.5 592 81.6
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.1e-283 979.5 614 80.8
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.1e-283 979.5 611 80.5
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 2.5e-283 978.4 613 79.9
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 3.3e-283 978.0 612 79.1
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 4.3e-283 977.6 610 79.7
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 7.3e-283 976.9 563 83.8
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 7.3e-283 976.9 563 83.8
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 7.3e-283 976.9 613 79.0
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.2e-282 976.1 563 83.8
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 1.2e-282 976.1 572 83.9
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 1.6e-282 975.7 647 76.5
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 1.6e-282 975.7 610 79.8
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 1.4e-281 972.6 618 78.6
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 1.4e-281 972.6 599 81.0
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 4.4e-280 967.6 611 78.1
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 1.7e-279 965.7 590 80.7
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 2.2e-279 965.3 605 79.0
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 2.2e-279 965.3 597 80.2
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 3.5e-277 958.0 577 82.0
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.0e-276 956.4 601 79.7
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 6.6e-276 953.7 611 79.1
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.5e-275 951.8 645 75.0
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 9.6e-275 949.9 562 82.2
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 2.1e-274 948.7 562 82.2
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 2.8e-274 948.3 562 82.0
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.4e-273 945.3 582 81.4
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 9.0e-273 943.3 568 81.9
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 2.0e-272 942.2 619 77.2
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.0e-272 942.2 656 72.7
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.6e-269 932.6 573 78.4
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 6.0e-269 930.6 689 70.2
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 6.7e-268 927.2 525 85.1
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.3e-267 924.5 559 82.6
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.6e-267 924.1 575 77.9
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 6.9e-265 917.1 608 75.0
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.0e-264 915.6 574 77.5
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 1.3e-263 912.9 589 75.0
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 1.0e-260 903.3 582 75.6
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 7.4e-259 897.1 617 74.6
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.2e-254 881.3 625 73.1
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.5e-254 880.9 558 76.7
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 4.3e-251 871.3 537 80.4
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.4e-248 861.7 525 80.0
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.4e-246 856.3 620 71.9
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.3e-242 843.2 624 69.2
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.7e-242 842.8 615 71.2
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 2.1e-237 825.9 580 69.8
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 7.7e-232 807.4 564 69.0
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 4.5e-224 781.6 490 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 2.7e-221 772.3 477 78.6
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 7.5e-219 764.2 490 78.2
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.3e-218 763.5 481 80.5
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 5.9e-216 754.6 556 66.2
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.7e-210 735.3 426 84.0
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 1.6e-208 729.9 433 81.5
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 7.7e-208 727.6 490 75.7
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.6e-205 719.9 433 80.1
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.5e-203 713.4 572 61.5
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 5.9e-200 701.4 429 80.0
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.9e-185 653.3 403 80.4
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 9.2e-177 624.4 433 74.4
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 5.4e-169 598.6 585 53.0
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 6.2e-157 558.5 312 88.1
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 2.9e-146 523.1 386 71.5
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 4.3e-126 456.1 340 71.8
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 1.1e-116 424.9 286 75.5
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 3.2e-105 386.7 277 67.5
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 1.9e-89 334.3 216 74.5
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 8.3e-77 292.4 209 71.8
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 6.0e-75 286.2 557 33.4
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.3e-73 280.4 154 86.4
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.7e-66 258.1 150 82.7
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 3.5e-59 233.8 131 85.5
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 1.4e-55 221.9 133 75.9
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 1.8e-55 221.5 126 85.7
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 2.2e-53 214.5 116 94.0
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 3.3e-49 200.7 144 70.8
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 3.3e-49 200.7 178 60.7
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 3.3e-49 200.7 115 82.6
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 7.3e-49 199.5 114 81.6
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.1e-47 194.1 105 85.7
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.0e-47 193.7 139 71.2
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.7e-43 181.0 115 74.8
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 5.6e-41 173.3 146 65.1
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 1.1e-39 169.1 217 48.4
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 1.4e-39 168.7 250 44.8
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 9.9e-38 162.5 153 60.8
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 1.0e-26 125.9 116 59.5
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 5.7e-25 120.2 61 91.8
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 1.2e-22 112.5 70 72.9
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.5e-20 104.8 56 89.3
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 4.6e-19 100.5 212 33.5
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 9.7e-17 92.8 73 67.1
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 4.1e-15 87.4 180 29.4
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 6.5e-13 80.1 67 56.7
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 4.6e-11 73.9 91 52.7


User provided reference genes

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