Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 3.6e-91 338.2 166 100.0
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 2.3e-82 308.9 164 90.9
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 3.2e-79 298.5 168 86.9
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 1.9e-71 272.7 162 83.3
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 4.1e-71 271.6 161 82.0
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 1.4e-66 256.5 155 79.4
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 1.4e-66 256.5 155 79.4
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.2e-66 254.6 156 80.8
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 3.4e-65 251.9 155 77.4
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 3.4e-65 251.9 155 77.4
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 3.4e-65 251.9 155 77.4
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 3.4e-65 251.9 155 77.4
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 1.7e-64 249.6 164 75.0
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 9.2e-63 243.8 148 77.0
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.6e-62 243.0 164 73.2
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.6e-62 243.0 164 73.2
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.6e-62 243.0 164 73.2
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 3.3e-60 235.3 165 72.1
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 5.6e-60 234.6 165 72.1
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 4.0e-58 228.4 156 68.6
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.6e-54 216.5 167 69.5
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 4.3e-52 208.4 156 64.1
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.6e-52 208.0 154 69.5
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 9.6e-52 207.2 159 61.0
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 9.6e-52 207.2 161 60.9
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 2.8e-51 205.7 132 66.7
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 4.8e-51 204.9 151 61.6
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.8e-51 204.9 151 61.6
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 4.8e-51 204.9 159 61.6
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 8.1e-51 204.1 159 61.0
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.1e-50 203.8 151 62.3
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.1e-50 203.8 149 63.1
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-50 203.4 151 60.9
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.4e-50 203.4 148 61.5
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.8e-50 203.0 151 60.9
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.8e-50 203.0 151 60.9
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.8e-50 203.0 166 57.8
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.8e-50 203.0 169 57.4
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.0e-50 201.8 151 60.3
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 4.0e-50 201.8 159 58.5
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 9.0e-50 200.7 179 54.7
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.0e-50 200.7 150 60.0
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.2e-49 200.3 146 62.3
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.2e-49 200.3 148 60.8
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.2e-49 200.3 163 57.1
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.0e-49 199.5 160 55.0
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.0e-49 199.5 179 54.2
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.0e-49 199.5 157 61.8
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 2.6e-49 199.1 171 54.4
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 2.6e-49 199.1 144 60.4
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 3.4e-49 198.7 158 60.1
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 4.4e-49 198.4 158 59.5
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 5.8e-49 198.0 126 67.5
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 7.6e-49 197.6 179 53.6
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 9.9e-49 197.2 143 63.6
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 9.9e-49 197.2 133 68.4
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 1.3e-48 196.8 133 65.4
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.2e-48 196.1 156 58.3
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 3.8e-48 195.3 133 67.7
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 8.4e-48 194.1 163 57.7
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 1.1e-47 193.7 158 57.6
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 1.4e-47 193.4 124 69.4
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 1.9e-47 193.0 142 60.6
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.9e-47 193.0 176 55.1
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.9e-47 193.0 131 62.6
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 3.2e-47 192.2 119 71.4
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.2e-46 190.3 145 58.6
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 1.2e-46 190.3 171 56.1
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.6e-46 189.9 131 64.1
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 1.6e-46 189.9 154 58.4
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 2.1e-46 189.5 133 61.7
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 3.5e-46 188.7 154 58.4
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 4.6e-46 188.3 151 59.6
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 6.0e-46 188.0 151 56.3
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 6.0e-46 188.0 132 63.6
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 6.0e-46 188.0 158 56.3
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 7.8e-46 187.6 151 58.3
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.0e-45 187.2 158 57.6
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.0e-45 187.2 158 57.6
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 1.0e-45 187.2 141 62.4
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.3e-45 186.8 176 55.1
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.3e-45 186.8 125 64.8
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.7e-45 186.4 147 61.2
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.3e-45 186.0 132 64.4
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.3e-45 186.0 132 64.4
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.0e-45 185.7 120 65.8
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 3.9e-45 185.3 132 63.6
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.9e-45 185.3 113 70.8
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 5.1e-45 184.9 148 58.8
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 5.1e-45 184.9 148 58.8
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 5.1e-45 184.9 157 56.1
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 1.1e-44 183.7 127 60.6
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 2.5e-44 182.6 129 63.6
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 4.3e-44 181.8 113 71.7
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 4.3e-44 181.8 151 58.3
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 5.6e-44 181.4 148 58.1
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.6e-43 179.9 156 56.4
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.8e-43 179.1 151 55.0
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.8e-43 179.1 156 56.4
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 3.6e-43 178.7 112 67.9
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 3.6e-43 178.7 133 57.9
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 3.6e-43 178.7 148 56.1
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 4.8e-43 178.3 154 58.4
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.2e-43 177.9 151 56.3
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 6.2e-43 177.9 141 58.2
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.8e-42 176.4 157 54.8
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 4.0e-42 175.3 125 60.8
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 5.8e-41 171.4 125 60.0
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 4.9e-40 168.3 120 61.7
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 4.9e-40 168.3 158 48.1
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 6.4e-40 167.9 126 58.7
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 8.4e-40 167.5 161 49.7
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 8.4e-40 167.5 158 48.1
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.4e-39 166.8 158 48.1
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.4e-39 166.8 165 49.1
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.4e-39 166.8 161 49.7
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.4e-39 166.8 122 59.0
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-39 166.8 113 65.5
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.9e-39 166.4 159 51.6
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.9e-39 166.4 125 58.4
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.4e-39 166.0 163 49.7
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.1e-39 164.5 113 62.8
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 9.3e-39 164.1 155 49.7
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 9.3e-39 164.1 120 60.0
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.6e-38 163.3 113 64.6
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 2.1e-38 162.9 127 57.5
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 2.7e-38 162.5 140 52.1
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 2.7e-38 162.5 126 58.7
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.9e-38 161.0 123 58.5
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 6.7e-37 157.9 145 52.4
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 7.4e-36 154.5 123 56.9
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.3e-35 153.7 127 52.0
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.4e-34 150.2 125 54.4
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.4e-34 149.4 108 61.1
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.5e-33 146.7 151 45.0
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 5.8e-33 144.8 127 52.0
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 5.8e-33 144.8 162 42.6
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.3e-32 143.7 128 52.3
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-32 143.3 103 60.2
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.2e-32 142.9 122 47.5
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 2.5e-31 139.4 113 55.8
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.1e-30 136.3 116 51.7
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 8.7e-29 131.0 91 61.5
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 4.3e-28 128.6 112 50.9
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.6e-27 126.7 99 56.6
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 2.8e-27 125.9 125 48.0
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.1e-26 124.0 109 53.2
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 2.0e-25 119.8 114 50.0
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.0e-24 117.5 107 48.6
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 1.0e-24 117.5 120 44.2
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 2.2e-24 116.3 125 44.8
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.9e-24 115.9 89 57.3
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 5.0e-24 115.2 118 44.1
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 5.0e-24 115.2 108 50.9
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.4e-24 114.4 96 55.2
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.2e-23 112.5 83 59.0
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.2e-22 110.5 150 38.0
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 2.7e-22 109.4 150 38.0
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.7e-22 109.4 119 41.2
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 6.1e-22 108.2 119 47.9
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.3e-21 107.1 107 44.9
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.3e-20 102.4 107 51.4
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-19 100.5 152 34.9
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 9.0e-18 94.4 73 57.5
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 2.0e-17 93.2 73 63.0
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.5e-15 86.3 67 55.2
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 6.1e-14 81.6 71 57.7
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 3.0e-13 79.3 127 33.9
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 1.1e-12 77.4 121 39.7
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 5.3e-10 68.6 43 67.4
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 5.9e-09 65.1 87 40.2
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.7e-06 56.2 42 57.1


User provided reference genes

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