Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.2e-146 523.1 259 100.0
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 7.0e-118 427.6 250 84.8
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.7e-111 405.2 262 77.9
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 5.1e-100 368.2 255 72.2
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 6.9e-89 331.3 254 69.3
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 1.6e-85 320.1 264 63.6
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 2.1e-85 319.7 264 63.3
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 3.5e-85 318.9 264 63.6
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 1.5e-80 303.5 242 70.2
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.8e-76 290.0 256 60.5
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 1.3e-71 273.9 232 62.1
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 2.2e-71 273.1 238 61.3
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 6.4e-71 271.6 224 62.5
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.9e-70 270.0 267 56.2
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 2.7e-69 266.2 267 55.1
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 7.9e-69 264.6 267 54.7
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 7.9e-69 264.6 277 53.4
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.8e-68 263.5 267 54.7
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 4.3e-67 258.8 279 51.3
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 4.3e-67 258.8 249 55.4
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 9.6e-67 257.7 279 52.0
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 6.2e-66 255.0 279 50.5
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.4e-65 253.8 266 53.0
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 9.0e-65 251.1 273 51.6
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 4.5e-64 248.8 276 50.0
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 4.5e-64 248.8 267 50.9
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 5.8e-64 248.4 257 52.5
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 7.6e-64 248.1 278 50.7
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 7.6e-64 248.1 285 49.5
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.0e-63 247.7 174 73.0
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 1.0e-63 247.7 275 50.2
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.3e-63 247.3 278 51.1
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 1.7e-63 246.9 284 49.3
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.7e-63 246.9 180 71.7
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 3.8e-63 245.7 181 65.2
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 3.8e-63 245.7 226 56.2
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 1.1e-62 244.2 281 49.8
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.9e-62 243.4 278 49.3
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 2.5e-62 243.0 275 50.2
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 2.5e-62 243.0 185 65.9
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.2e-62 242.7 237 51.1
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 3.2e-62 242.7 281 48.4
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 5.5e-62 241.9 277 47.7
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.2e-61 240.7 282 48.2
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.6e-61 240.4 282 48.6
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 2.1e-61 240.0 281 49.5
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 2.7e-61 239.6 279 48.7
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 2.7e-61 239.6 185 65.4
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 2.7e-61 239.6 254 51.2
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 6.0e-61 238.4 251 52.2
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 1.3e-60 237.3 280 48.6
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.3e-60 237.3 283 48.4
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.3e-60 237.3 280 49.6
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 1.8e-60 236.9 281 49.5
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 1.8e-60 236.9 281 47.3
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 2.3e-60 236.5 182 64.3
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 3.0e-60 236.1 286 47.9
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 3.0e-60 236.1 287 47.4
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.9e-60 235.7 234 54.3
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 5.1e-60 235.3 280 47.1
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 5.1e-60 235.3 278 48.2
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 6.7e-60 235.0 182 63.7
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 6.7e-60 235.0 287 46.7
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.1e-59 234.2 281 49.1
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.5e-59 233.8 243 51.0
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 1.5e-59 233.8 232 52.6
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.5e-59 233.8 278 49.6
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 1.9e-59 233.4 324 43.8
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.5e-59 233.0 278 47.5
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 3.3e-59 232.6 283 48.1
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 3.3e-59 232.6 259 51.0
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 3.3e-59 232.6 182 63.7
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 3.3e-59 232.6 284 45.4
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 4.3e-59 232.3 281 47.0
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 9.7e-59 231.1 286 46.2
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 1.3e-58 230.7 182 62.1
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 2.2e-58 229.9 287 45.6
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 4.8e-58 228.8 185 61.6
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 6.3e-58 228.4 232 53.9
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 8.2e-58 228.0 185 61.1
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 8.2e-58 228.0 186 61.8
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.4e-57 227.3 281 45.9
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.8e-57 226.9 275 47.6
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.1e-57 226.1 290 45.5
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 6.9e-57 224.9 280 46.1
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 3.4e-56 222.6 264 45.1
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 3.4e-56 222.6 273 44.0
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 7.7e-56 221.5 297 43.4
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 8.5e-55 218.0 185 59.5
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 8.5e-55 218.0 187 57.2
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 8.5e-55 218.0 277 43.7
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 1.4e-54 217.2 193 57.0
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.9e-54 216.9 278 45.7
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 5.5e-54 215.3 200 54.5
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 5.5e-54 215.3 285 44.6
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 9.4e-54 214.5 221 52.0
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 2.1e-53 213.4 228 53.9
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 2.1e-53 213.4 225 50.2
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 2.7e-53 213.0 184 58.2
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 7.9e-53 211.5 251 49.4
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 1.0e-52 211.1 188 56.4
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 1.8e-52 210.3 223 51.1
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 8.8e-52 208.0 183 56.8
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.5e-51 207.2 228 50.4
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 2.8e-50 203.0 144 69.4
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 3.7e-50 202.6 266 45.5
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 6.3e-50 201.8 245 46.5
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 2.4e-49 199.9 272 45.2
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 4.1e-49 199.1 182 53.8
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 5.9e-48 195.3 230 50.9
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.3e-47 194.1 224 45.1
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 1.6e-45 187.2 166 59.6
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 5.1e-44 182.2 180 54.4
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 7.4e-43 178.3 147 63.3
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 9.7e-43 177.9 223 48.4
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.6e-40 169.9 164 53.7
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 7.7e-40 168.3 164 53.7
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 2.2e-39 166.8 185 45.9
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.5e-38 163.3 165 52.1
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 5.5e-38 162.2 285 36.5
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 9.4e-38 161.4 263 39.2
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 5.2e-36 155.6 214 46.3
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 5.7e-35 152.1 166 48.2
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.1e-33 147.9 167 49.7
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.8e-33 147.1 168 45.2
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 4.1e-33 146.0 168 49.4
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 2.0e-32 143.7 178 47.8
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 2.2e-31 140.2 137 53.3
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 6.5e-31 138.7 121 55.4
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-30 137.9 89 74.2
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 1.2e-29 134.4 194 43.3
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 3.7e-26 122.9 245 31.0
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 7.7e-24 115.2 129 51.2
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.0e-21 105.1 115 50.4
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.0e-19 100.5 109 51.4
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 7.5e-19 98.6 123 42.3
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 2.0e-16 90.5 225 29.8
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 6.6e-15 85.5 158 38.0
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.1e-13 80.5 63 50.8
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 2.1e-13 80.5 156 35.3
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 2.8e-13 80.1 65 52.3
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.4e-12 77.8 67 62.7
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 1.8e-12 77.4 49 59.2
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 4.4e-11 72.8 61 62.3
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 5.9e-08 62.4 182 30.2
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 6.6e-07 58.9 71 49.3
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 6.6e-07 58.9 71 49.3


User provided reference genes

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