Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 0.0e+00 1204.9 677 100.0
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.3e-285 985.3 685 79.6
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.6e-249 865.5 703 71.1
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 7.0e-242 840.9 704 67.5
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.0e-237 827.0 688 73.5
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.0e-232 810.4 688 73.8
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.4e-229 800.0 684 72.2
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 3.7e-227 792.0 688 70.5
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 5.0e-224 781.6 685 70.7
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 6.5e-224 781.2 686 73.0
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.4e-221 773.5 688 70.9
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 3.0e-221 772.3 691 70.9
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.2e-220 770.4 686 70.0
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 1.4e-218 763.5 691 69.8
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 2.0e-217 759.6 686 69.4
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 2.3e-216 756.1 686 71.3
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 5.0e-216 755.0 691 69.2
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-215 753.8 691 69.6
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.9e-215 753.1 690 69.9
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-214 750.4 691 69.9
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 2.1e-177 626.7 559 70.8
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.6e-169 600.5 692 58.8
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.0e-152 544.7 706 55.1
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 5.7e-151 538.9 701 54.4
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 3.4e-148 529.6 701 53.8
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 2.9e-147 526.6 708 53.0
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 6.1e-145 518.8 705 47.4
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 7.4e-143 511.9 709 52.9
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.4e-140 503.1 706 53.1
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.7e-139 500.7 706 53.4
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 8.5e-139 498.4 706 53.3
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.7e-137 493.4 709 50.9
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.3e-136 490.3 706 52.3
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.1e-136 489.2 706 52.1
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 2.6e-135 486.9 701 50.1
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 4.4e-135 486.1 707 52.1
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 4.4e-135 486.1 701 52.6
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 5.7e-135 485.7 703 49.5
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 7.4e-135 485.3 706 51.8
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 7.4e-135 485.3 707 49.9
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 2.6e-132 476.9 707 50.5
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 3.8e-131 473.0 702 49.0
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.9e-130 470.7 712 50.0
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.1e-129 467.2 732 49.5
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 4.7e-129 466.1 710 51.5
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.0e-128 464.9 714 48.0
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.4e-128 464.5 708 49.6
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 2.0e-127 460.7 709 46.8
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 2.8e-126 456.8 703 49.5
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 2.8e-126 456.8 711 48.4
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 2.8e-126 456.8 706 49.2
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 3.7e-126 456.4 712 49.0
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 5.3e-125 452.6 713 48.2
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 5.3e-125 452.6 716 46.8
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.6e-124 451.1 710 50.4
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.6e-124 450.3 717 48.1
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.5e-124 449.9 716 48.7
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.0e-123 448.4 704 49.3
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.3e-123 448.0 710 50.3
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.7e-123 447.6 697 43.2
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 2.9e-123 446.8 709 46.8
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 6.5e-123 445.7 703 48.1
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 8.5e-123 445.3 771 37.4
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 8.5e-123 445.3 712 45.5
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.1e-122 444.9 763 42.7
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 4.2e-122 443.0 719 47.7
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.7e-121 440.3 712 47.3
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.0e-120 438.3 708 41.4
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 5.7e-119 432.6 707 47.4
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.3e-118 431.4 698 42.7
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 2.2e-118 430.6 702 48.0
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 3.7e-118 429.9 701 48.5
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.8e-118 429.5 711 46.6
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 1.8e-117 427.6 701 47.5
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.8e-117 427.6 707 47.8
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 3.1e-117 426.8 712 48.2
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 4.1e-117 426.4 706 46.3
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 1.3e-115 421.4 708 47.2
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 8.5e-115 418.7 701 47.4
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.1e-114 418.3 746 44.2
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 2.5e-114 417.2 676 49.7
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 4.2e-114 416.4 705 45.8
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 5.5e-114 416.0 706 45.0
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 2.1e-113 414.1 732 46.3
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 6.1e-113 412.5 706 47.0
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.4e-112 411.4 703 46.7
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.8e-112 411.0 707 45.7
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.5e-111 407.9 634 50.9
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.8e-109 401.0 709 44.7
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.4e-109 400.6 706 46.3
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 3.1e-109 400.2 738 44.2
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.0e-108 397.5 707 45.3
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 7.7e-108 395.6 635 49.3
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.7e-107 394.4 713 46.4
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.7e-107 394.4 704 41.8
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 8.6e-107 392.1 666 47.9
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.1e-106 391.7 719 45.9
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.3e-104 384.0 711 44.0
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.2e-104 382.9 704 43.3
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 3.1e-101 373.6 717 44.8
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 9.2e-101 372.1 700 45.4
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 2.7e-100 370.5 638 49.1
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.8e-97 360.5 542 41.1
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 8.0e-97 359.0 472 57.4
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.0e-96 358.6 699 36.5
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 5.8e-95 352.8 699 35.2
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 9.8e-95 352.1 705 44.3
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.9e-94 350.5 702 36.8
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.6e-89 334.7 708 34.6
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 3.7e-86 323.6 522 49.6
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.2e-84 318.5 705 33.6
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-79 300.4 527 39.5
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 7.1e-77 292.7 630 44.0
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.2e-77 292.4 515 47.4
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 4.3e-74 283.5 533 47.1
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.4e-72 277.7 527 35.7
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.2e-71 275.4 703 33.3
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 5.1e-67 260.0 710 38.3
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 5.3e-64 250.0 522 34.9
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 2.2e-62 244.6 464 38.6
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.8e-55 219.9 432 35.2
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 9.9e-55 219.2 427 45.2
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 1.9e-53 214.9 350 40.6
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 9.6e-50 202.6 269 57.2
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 6.9e-48 196.4 256 66.0
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-45 188.3 474 30.8
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.2e-44 185.7 318 41.2
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-44 184.9 467 31.9
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 6.7e-43 179.9 704 30.4
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 4.0e-40 170.6 124 67.7
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.1e-37 162.5 124 66.9
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 3.2e-37 161.0 134 67.2
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.6e-36 158.7 253 41.9
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 3.5e-36 157.5 189 47.6
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 3.6e-28 131.0 268 36.9
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.4e-27 129.0 134 55.2
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.0e-27 127.9 126 50.8
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 9.7e-26 122.9 272 32.4
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-25 121.3 126 51.6
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 6.9e-24 116.7 137 51.1
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.2e-23 115.9 116 51.7
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 4.5e-23 114.0 186 40.3
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 2.2e-22 111.7 534 27.0
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.1e-20 105.1 198 38.9
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 1.0e-19 102.8 140 47.9
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.4e-19 102.4 124 41.9
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 2.2e-17 95.1 112 46.4
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-16 92.0 99 53.5
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 1.3e-14 85.9 76 57.9
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 2.2e-14 85.1 71 60.6
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.4e-13 79.7 96 49.0
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 8.0e-12 76.6 128 40.6
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 1.0e-11 76.3 154 37.7
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 9.7e-10 69.7 124 37.1
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 1.7e-09 68.9 130 31.5
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.3e-09 67.0 103 39.8
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.3e-09 67.0 103 39.8
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.2e-09 66.6 100 40.0
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.4e-08 65.9 103 35.9
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.1e-08 64.7 52 55.8
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.1e-08 64.3 65 55.4
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.1e-08 63.2 65 53.8
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 2.6e-07 61.6 284 23.9
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-07 61.2 65 52.3
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-07 61.2 65 52.3
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-07 61.2 65 52.3
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.9e-07 60.5 103 37.9
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-06 59.7 65 50.8
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 1.7e-06 58.9 258 23.3
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.2e-06 58.5 103 36.9
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 8.5e-06 56.6 241 27.8


User provided reference genes

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