Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 8.2e-188 660.2 330 100.0
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 7.5e-173 610.5 330 92.1
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 1.3e-172 609.8 330 91.8
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 6.8e-166 587.4 326 88.7
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 4.7e-159 564.7 326 85.3
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.4e-158 563.1 327 85.9
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 2.3e-158 562.4 326 84.0
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 5.7e-157 557.8 326 83.4
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 7.5e-157 557.4 329 85.4
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.3e-156 556.6 326 83.4
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.7e-156 556.2 327 85.6
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 2.4e-155 552.4 326 82.8
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 3.5e-154 548.5 326 82.8
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 7.8e-154 547.4 327 82.6
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 8.0e-151 537.3 326 79.1
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.3e-145 520.0 306 85.3
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 6.2e-143 511.1 298 85.6
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 1.6e-138 496.5 327 76.8
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 8.3e-132 474.2 328 70.1
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 8.7e-113 411.0 293 62.5
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.4e-110 403.7 300 62.0
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 4.0e-110 402.1 293 62.5
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 4.0e-110 402.1 309 61.2
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 6.9e-110 401.4 292 61.0
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 6.9e-110 401.4 324 58.6
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.5e-109 400.2 293 61.8
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.3e-108 397.1 291 62.2
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 8.4e-108 394.4 324 57.4
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.1e-107 394.0 301 61.1
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 1.1e-107 394.0 295 60.0
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 1.4e-107 393.7 292 62.3
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 1.2e-106 390.6 293 61.1
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.2e-106 390.6 303 60.1
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 3.5e-106 389.0 321 57.6
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.6e-106 388.7 303 59.7
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.3e-105 387.1 302 60.3
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 5.1e-105 385.2 293 61.1
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 8.7e-105 384.4 286 61.9
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.9e-104 383.3 330 55.8
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 3.3e-104 382.5 297 60.3
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 3.3e-104 382.5 302 58.9
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 9.6e-104 380.9 292 62.0
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.3e-103 380.6 294 59.9
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.3e-103 380.6 284 62.3
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 6.2e-103 378.3 325 57.2
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 8.1e-103 377.9 286 60.8
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.8e-102 376.7 326 54.9
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.8e-102 376.7 294 59.2
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.8e-102 376.7 337 54.0
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.0e-101 373.2 283 61.8
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 4.5e-101 372.1 284 60.9
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 1.0e-100 370.9 317 56.8
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 3.8e-100 369.0 317 56.5
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 5.5e-99 365.2 250 67.6
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 9.3e-99 364.4 286 60.5
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 1.2e-98 364.0 315 54.9
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 2.1e-98 363.2 286 59.1
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 7.9e-98 361.3 296 57.1
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 7.9e-98 361.3 250 64.0
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.3e-97 359.8 294 57.5
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 2.3e-97 359.8 351 50.7
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 6.7e-97 358.2 287 57.1
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.1e-96 357.5 319 56.1
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 4.3e-96 355.5 284 57.7
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 5.7e-96 355.1 328 54.9
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 9.6e-96 354.4 313 53.4
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.6e-95 353.6 282 58.5
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 2.8e-95 352.8 283 58.7
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 3.7e-95 352.4 323 53.9
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 6.2e-95 351.7 281 58.4
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 6.2e-95 351.7 281 58.4
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 6.2e-95 351.7 282 58.5
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 4.0e-94 349.0 317 53.3
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 5.3e-94 348.6 254 63.8
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 6.9e-94 348.2 282 57.4
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 6.9e-94 348.2 256 62.9
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 1.2e-93 347.4 282 57.4
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.7e-92 343.6 246 63.0
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 5.0e-92 342.0 284 56.3
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 4.2e-91 339.0 250 61.6
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 2.7e-90 336.3 248 62.1
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 6.1e-90 335.1 257 60.7
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 2.3e-89 333.2 310 52.9
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 2.5e-88 329.7 250 60.8
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.1e-86 324.3 228 65.4
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 3.6e-82 309.3 283 52.3
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.6e-82 308.9 303 51.2
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.1e-82 308.5 303 51.2
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 2.3e-81 306.6 302 51.3
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.4e-78 297.4 293 50.2
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 5.9e-77 292.0 324 47.2
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 4.2e-75 285.8 219 60.7
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 2.0e-72 276.9 225 57.8
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.8e-71 273.1 283 48.1
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.1e-70 271.2 278 45.7
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 4.1e-70 269.2 278 47.5
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 4.5e-69 265.8 195 60.5
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 2.2e-68 263.5 279 44.4
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.0e-68 262.3 188 62.2
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.5e-67 260.8 282 47.5
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 3.2e-67 259.6 184 61.4
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 5.5e-67 258.8 188 61.2
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 8.0e-66 255.0 321 40.5
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.1e-62 243.0 330 42.4
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 3.2e-59 233.0 157 63.1
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 2.7e-58 229.9 154 63.6
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.8e-57 227.3 153 65.4
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 2.3e-49 200.3 235 47.2
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.2e-48 198.0 240 46.2
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.6e-48 196.8 175 54.3
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.6e-48 196.8 240 46.7
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.3e-47 194.5 148 58.8
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.0e-41 174.9 166 51.2
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 9.8e-40 168.3 217 36.4
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 2.0e-37 160.6 114 62.3
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 6.6e-36 155.6 151 51.7
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 4.3e-35 152.9 232 40.9
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 6.2e-34 149.1 131 56.5
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 1.8e-33 147.5 123 51.2
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.1e-33 146.7 200 42.5
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 7.5e-32 142.1 76 90.8
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 3.5e-29 133.3 119 54.6
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 7.8e-29 132.1 128 55.5
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 5.0e-28 129.4 127 52.8
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.1e-26 124.0 74 68.9
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 5.2e-25 119.4 102 53.9
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.2e-24 118.2 286 29.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 7.5e-24 115.5 100 53.0
AL1G44350 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.3e-17 94.0 119 50.4
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.5e-16 91.3 163 37.4
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.7e-15 87.8 67 64.2
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.1e-11 75.1 78 52.6
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 2.5e-11 73.9 114 42.1
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.6e-10 70.1 79 45.6


User provided reference genes

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