Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 3.3e-122 441.8 237 100.0
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.9e-117 426.0 237 96.2
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.4e-117 425.6 237 96.2
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.1e-114 416.8 237 94.1
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 9.0e-112 407.1 237 92.8
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.5e-111 406.4 237 90.7
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 5.5e-101 371.3 237 85.2
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 5.5e-101 371.3 237 85.2
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 4.6e-100 368.2 237 84.8
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 4.6e-100 368.2 237 84.8
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 6.5e-94 347.8 210 88.6
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.5e-93 345.9 242 79.8
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.7e-92 342.4 242 78.5
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.1e-90 337.0 246 76.0
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.0e-87 326.2 207 83.1
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 6.1e-84 314.7 243 71.2
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.0e-83 313.9 242 69.4
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 2.0e-82 309.7 241 70.1
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 4.4e-82 308.5 243 71.2
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 5.7e-82 308.1 239 69.9
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 6.3e-81 304.7 233 72.1
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 8.2e-81 304.3 241 69.3
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.4e-80 303.5 233 70.8
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.8e-80 303.1 233 71.7
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.4e-80 302.8 244 67.2
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 5.3e-80 301.6 233 67.4
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 9.1e-80 300.8 205 78.0
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.2e-79 300.4 241 68.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 4.5e-79 298.5 204 78.4
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 5.9e-79 298.1 239 68.6
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.0e-78 297.4 205 78.0
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.0e-78 297.4 239 68.6
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 2.9e-78 295.8 204 77.9
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.8e-78 295.4 245 66.1
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.1e-77 293.9 244 67.6
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.5e-77 293.5 205 76.1
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.5e-77 293.5 244 66.0
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.9e-77 293.1 245 65.3
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.9e-77 293.1 207 74.4
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 2.5e-77 292.7 230 68.7
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.5e-77 292.7 245 66.1
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.5e-77 292.7 240 67.1
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 3.2e-77 292.4 245 65.7
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 4.2e-77 292.0 208 75.5
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.2e-77 292.0 208 73.1
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 5.5e-77 291.6 204 76.5
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 5.5e-77 291.6 211 72.5
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 9.4e-77 290.8 236 67.4
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.2e-76 290.4 248 63.3
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.2e-76 290.4 207 73.4
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.6e-76 290.0 242 64.9
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 2.7e-76 289.3 242 65.7
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.7e-76 289.3 245 65.3
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 2.7e-76 289.3 204 75.5
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 2.7e-76 289.3 205 75.1
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 2.7e-76 289.3 245 64.9
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.6e-76 288.9 207 74.9
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 3.6e-76 288.9 205 75.1
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 6.1e-76 288.1 207 75.8
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 6.1e-76 288.1 245 65.7
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 6.1e-76 288.1 244 65.6
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 8.0e-76 287.7 205 75.1
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.0e-75 287.3 208 73.1
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.4e-75 287.0 237 67.5
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.4e-75 287.0 208 72.6
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 2.3e-75 286.2 208 74.5
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 3.9e-75 285.4 229 65.1
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 5.2e-75 285.0 244 64.3
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 5.2e-75 285.0 237 67.1
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 5.2e-75 285.0 207 73.9
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 8.8e-75 284.3 208 71.6
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.8e-75 284.3 237 66.7
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.0e-74 283.1 237 66.7
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 2.6e-74 282.7 225 68.4
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 4.4e-74 282.0 211 70.6
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 4.4e-74 282.0 206 74.3
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 4.4e-74 282.0 198 74.7
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 5.7e-74 281.6 206 74.3
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.7e-74 281.6 245 64.9
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 5.7e-74 281.6 207 72.0
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 5.7e-74 281.6 245 64.5
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.4e-74 281.2 237 66.7
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.7e-73 280.0 205 72.7
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.2e-73 279.6 188 78.2
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.2e-73 279.6 213 70.4
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 2.2e-73 279.6 229 67.7
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 2.8e-73 279.3 205 72.7
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 3.7e-73 278.9 208 71.2
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 4.8e-73 278.5 207 72.0
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 6.3e-73 278.1 242 63.6
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.1e-72 277.3 198 74.2
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.1e-72 277.3 208 70.2
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.8e-72 276.6 241 63.5
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.1e-72 275.8 242 63.6
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 5.3e-72 275.0 183 79.8
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.3e-72 275.0 245 62.0
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 7.0e-72 274.6 210 71.0
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 7.0e-72 274.6 210 70.5
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 4.5e-71 271.9 207 70.0
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 4.5e-71 271.9 207 70.0
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 4.5e-71 271.9 207 70.5
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 4.5e-71 271.9 208 72.1
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 4.5e-71 271.9 207 69.1
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 4.5e-71 271.9 244 62.7
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 5.9e-71 271.6 224 64.3
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 7.7e-71 271.2 205 72.7
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.7e-71 271.2 197 73.6
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.0e-70 270.8 242 63.2
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.7e-70 270.0 209 69.4
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.2e-70 269.6 200 72.0
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.5e-69 266.2 201 71.1
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 3.2e-69 265.8 201 71.1
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 4.2e-69 265.4 206 68.4
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 4.2e-69 265.4 207 67.6
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 7.2e-69 264.6 246 61.0
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 9.4e-69 264.2 210 67.1
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 3.6e-68 262.3 213 68.5
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 3.6e-68 262.3 213 68.1
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 4.4e-66 255.4 206 67.5
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 2.8e-65 252.7 207 63.3
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 3.7e-65 252.3 198 66.7
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 3.7e-65 252.3 219 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 2.7e-63 246.1 198 65.7
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 5.9e-63 245.0 159 82.4
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 9.4e-61 237.7 222 56.8
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.7e-60 236.1 175 69.7
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 3.4e-50 202.6 218 56.9
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 3.7e-49 199.1 189 58.2
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-48 197.6 165 67.3
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.0e-46 191.0 225 50.7
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 5.4e-40 168.7 135 68.9
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 1.6e-36 157.1 174 48.3
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 3.6e-36 156.0 113 69.0
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 4.9e-33 145.6 171 45.6
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.4e-32 144.1 218 46.8
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.1e-29 134.4 104 67.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 5.6e-29 132.1 188 42.0
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 4.9e-25 119.0 109 56.0
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 4.6e-23 112.5 86 64.0
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 7.6e-18 95.1 90 63.3
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 3.8e-17 92.8 210 31.9
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 2.4e-16 90.1 84 61.9
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 3.9e-14 82.8 189 31.2
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 4.4e-10 69.3 58 63.8
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.5e-07 59.7 57 59.6
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 8.7e-06 55.1 66 54.5


User provided reference genes

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