Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 3.1e-107 392.5 317 100.0
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 3.5e-87 325.9 246 78.9
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 5.1e-86 322.0 250 77.6
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 1.5e-85 320.5 247 76.5
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 2.4e-80 303.1 248 75.4
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 2.4e-80 303.1 248 75.4
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 3.2e-80 302.8 246 82.1
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 4.2e-80 302.4 248 75.0
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 4.2e-80 302.4 248 75.0
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 1.6e-76 290.4 242 72.3
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 2.1e-71 273.5 272 73.9
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 1.6e-68 263.8 319 59.6
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 6.1e-63 245.4 327 58.1
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 6.3e-52 208.8 281 48.0
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 3.4e-50 203.0 303 43.9
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 7.7e-50 201.8 270 47.0
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 1.0e-49 201.4 260 48.5
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.3e-49 201.1 294 44.6
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.7e-49 200.7 361 42.7
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 2.9e-49 199.9 279 46.6
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 8.5e-49 198.4 361 41.8
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.5e-49 198.4 275 46.9
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 1.9e-48 197.2 275 46.5
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 1.9e-48 197.2 280 48.6
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 2.5e-48 196.8 345 42.6
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.2e-48 196.4 275 46.5
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 3.2e-48 196.4 280 45.7
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 7.2e-48 195.3 365 41.6
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 1.2e-47 194.5 283 48.8
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 1.6e-47 194.1 305 44.3
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 2.7e-47 193.4 289 44.6
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 3.6e-47 193.0 266 48.5
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 6.1e-47 192.2 296 48.3
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.8e-46 190.7 305 42.6
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 1.8e-46 190.7 281 45.9
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 3.0e-46 189.9 279 47.7
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 5.2e-46 189.1 278 46.4
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 5.2e-46 189.1 284 45.8
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 2.6e-45 186.8 263 48.3
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.3e-45 186.4 310 41.3
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 4.4e-45 186.0 271 49.4
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 7.4e-45 185.3 276 44.9
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 1.1e-43 181.4 317 41.3
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 1.4e-43 181.0 256 46.1
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 2.4e-43 180.3 268 44.8
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 2.4e-43 180.3 269 45.4
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 2.4e-43 180.3 268 43.3
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 2.4e-43 180.3 263 45.2
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 3.1e-43 179.9 286 42.7
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 4.5e-42 176.0 286 42.7
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 5.9e-42 175.6 264 44.7
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 1.3e-41 174.5 285 44.2
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 2.2e-41 173.7 297 42.1
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 2.9e-41 173.3 265 44.5
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 5.0e-41 172.6 330 39.1
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 8.5e-41 171.8 304 40.1
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 8.5e-41 171.8 312 41.7
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 1.9e-40 170.6 323 39.3
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 4.2e-40 169.5 334 36.8
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 7.2e-40 168.7 273 42.1
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 7.2e-40 168.7 304 39.5
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 9.4e-40 168.3 266 51.9
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 1.6e-39 167.5 259 46.3
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 1.6e-39 167.5 285 43.2
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 4.7e-39 166.0 304 38.8
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 6.1e-39 165.6 279 43.4
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 6.1e-39 165.6 259 45.9
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 1.4e-38 164.5 334 37.4
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 1.8e-38 164.1 262 42.0
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 2.3e-38 163.7 304 39.5
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 3.0e-38 163.3 281 43.8
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 3.0e-38 163.3 266 44.0
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 4.0e-38 162.9 281 42.0
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.5e-37 161.0 313 39.3
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 3.3e-37 159.8 246 43.9
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 1.3e-36 157.9 271 40.6
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 2.2e-36 157.1 263 41.1
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 1.4e-35 154.5 260 42.7
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 1.8e-35 154.1 308 53.2
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 9.1e-35 151.8 267 39.7
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 2.7e-34 150.2 248 41.9
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 2.7e-34 150.2 329 44.4
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 2.7e-34 150.2 329 45.0
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 5.9e-34 149.1 284 40.1
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 5.9e-34 149.1 301 38.5
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 1.7e-33 147.5 244 42.2
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 2.2e-33 147.1 290 39.7
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 2.9e-33 146.7 329 44.7
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 4.2e-32 142.9 276 39.5
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 2.1e-31 140.6 309 42.4
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.7e-31 140.2 129 58.1
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.7e-28 131.0 129 57.4
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.8e-28 129.4 231 41.6
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 6.3e-28 129.0 302 38.7
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 8.3e-28 128.6 211 40.8
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 5.4e-27 125.9 270 37.0
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 3.8e-25 119.8 336 33.6
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 3.8e-25 119.8 283 35.7
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.5e-24 117.1 226 38.9
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 4.2e-24 116.3 275 36.0
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 8.0e-23 112.1 236 35.2
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 2.3e-22 110.5 269 34.2
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 2.3e-22 110.5 65 76.9
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 2.3e-22 110.5 68 75.0
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 8.8e-22 108.6 250 36.8
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 8.3e-20 102.1 152 44.7
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 7.0e-19 99.0 67 71.6
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 1.0e-17 95.1 266 32.0
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 4.3e-16 89.7 129 43.4
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.4e-14 84.7 229 33.6
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.3e-14 84.0 207 34.8
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 5.2e-14 82.8 114 43.0
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.2e-13 81.6 155 38.7
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 7.5e-13 79.0 166 38.0
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 2.7e-10 70.5 50 70.0
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.5e-10 70.1 168 36.9
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.0e-09 68.6 117 40.2
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 1.1e-08 65.1 43 81.4
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 3.3e-08 63.5 111 36.9
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.6e-07 60.1 42 71.4
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.6e-07 60.1 42 71.4
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 8.9e-06 55.5 139 35.3
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 8.9e-06 55.5 35 80.0


User provided reference genes

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