Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 1.5e-303 1045.4 543 100.0
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 4.4e-279 964.1 548 92.3
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 5.5e-266 920.6 547 89.6
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 2.8e-262 908.3 548 87.8
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 5.2e-256 887.5 555 85.9
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.2e-255 886.3 550 86.4
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 6.6e-243 844.0 582 78.5
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 1.5e-242 842.8 550 81.8
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 1.2e-241 839.7 550 81.6
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 3.6e-241 838.2 550 81.6
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 3.6e-241 838.2 550 81.6
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 8.9e-240 833.6 549 81.1
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 2.6e-231 805.4 558 78.3
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 6.9e-200 701.0 559 67.6
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 4.5e-191 671.8 561 67.0
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 2.5e-189 666.0 562 64.4
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.2e-188 663.7 559 65.3
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 1.6e-188 663.3 562 64.8
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 3.6e-188 662.1 550 65.8
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 4.6e-188 661.8 559 65.3
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 7.9e-188 661.0 569 64.1
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 1.4e-187 660.2 563 64.1
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 1.8e-187 659.8 572 63.6
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 2.5e-186 656.0 576 63.4
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 3.3e-186 655.6 562 64.6
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 9.7e-186 654.1 565 64.6
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 9.7e-186 654.1 572 63.1
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.3e-185 653.7 560 64.1
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.3e-185 651.4 568 63.7
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.1e-184 650.6 569 63.6
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 3.4e-183 645.6 561 64.2
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 5.0e-182 641.7 570 63.2
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 1.1e-181 640.6 572 62.4
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 4.2e-181 638.6 557 62.3
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 2.7e-180 636.0 565 62.1
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.6e-180 635.6 598 60.5
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 4.7e-180 635.2 565 63.4
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 7.9e-180 634.4 561 62.4
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.4e-179 633.6 574 61.7
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 6.7e-179 631.3 584 61.8
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 4.4e-178 628.6 573 62.8
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 1.7e-177 626.7 578 60.9
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.2e-177 626.3 559 62.8
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 4.8e-177 625.2 559 62.8
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 2.4e-176 622.9 561 61.9
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 3.1e-176 622.5 565 60.9
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 3.1e-176 622.5 554 61.9
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.5e-173 613.6 559 61.4
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 1.9e-173 613.2 595 57.8
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 2.5e-173 612.8 564 60.1
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 3.2e-173 612.5 575 59.8
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 7.2e-173 611.3 568 60.6
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.6e-172 610.1 542 63.7
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 2.7e-172 609.4 560 61.8
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 3.6e-172 609.0 566 61.5
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 4.7e-172 608.6 556 61.5
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 3.9e-171 605.5 564 61.5
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.9e-171 605.5 542 62.0
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 5.2e-171 605.1 562 61.6
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 2.0e-170 603.2 562 60.5
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 5.7e-170 601.7 560 59.8
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.4e-170 601.3 617 57.2
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 2.2e-169 599.7 564 60.1
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 6.3e-169 598.2 539 61.4
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 1.6e-167 593.6 555 61.1
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 2.0e-167 593.2 543 61.1
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 3.5e-167 592.4 556 61.0
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.0e-166 590.9 588 59.5
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 8.5e-166 587.8 560 59.5
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 4.2e-165 585.5 538 61.5
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 4.2e-165 585.5 561 59.4
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 7.2e-165 584.7 570 59.5
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.2e-164 583.9 562 60.5
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.6e-164 583.6 573 59.2
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 1.6e-164 583.6 562 58.9
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 2.1e-164 583.2 562 59.4
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 2.1e-164 583.2 528 61.6
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.1e-164 581.6 586 57.7
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 6.1e-164 581.6 557 58.9
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.0e-163 578.9 564 59.2
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 6.3e-161 571.6 563 58.1
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 4.1e-160 568.9 579 56.8
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 5.4e-160 568.5 570 57.9
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 4.5e-159 565.5 580 57.1
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 1.7e-158 563.5 600 53.8
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 2.9e-158 562.8 553 57.7
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 5.5e-157 558.5 549 58.7
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 2.1e-156 556.6 526 60.5
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 4.7e-156 555.4 477 63.7
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.8e-155 553.5 552 58.0
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 6.8e-155 551.6 573 56.0
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 4.4e-154 548.9 436 65.8
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 4.4e-154 548.9 554 56.3
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 1.8e-152 543.5 555 59.8
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 3.5e-151 539.3 555 56.2
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.0e-150 537.7 575 54.6
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.3e-150 537.3 537 57.4
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.4e-147 527.3 543 56.0
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 3.4e-146 522.7 560 53.4
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 3.4e-146 522.7 569 52.7
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 7.5e-146 521.5 554 53.2
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 4.6e-143 512.3 566 53.5
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.2e-140 504.2 552 54.0
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 3.7e-137 492.7 570 51.9
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 3.5e-135 486.1 284 85.9
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 3.5e-135 486.1 517 54.7
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 1.7e-126 457.2 559 52.1
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 4.4e-122 442.6 365 64.7
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 4.1e-120 436.0 515 51.3
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.6e-119 434.1 499 53.5
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 1.1e-117 427.9 286 74.5
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.2e-114 417.9 377 58.6
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 1.3e-113 414.5 288 73.6
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 4.2e-112 409.5 553 47.6
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 5.4e-112 409.1 288 72.2
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 5.4e-112 409.1 393 59.3
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 4.6e-103 379.4 408 57.4
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 1.8e-94 350.9 369 53.9
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 8.7e-94 348.6 261 77.0
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 3.4e-90 336.7 596 40.1
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 4.9e-89 332.8 225 77.8
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.1e-83 315.1 267 62.9
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 7.4e-77 292.4 231 66.2
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 2.0e-69 267.7 553 37.4
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-64 251.5 318 47.8
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.5e-61 241.5 235 57.0
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 4.8e-60 236.5 635 33.2
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 2.0e-58 231.1 271 52.8
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 5.9e-58 229.6 298 52.0
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.9e-57 227.3 294 47.3
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 2.9e-57 227.3 187 59.4
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 1.2e-55 221.9 143 78.3
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 3.0e-54 217.2 247 49.0
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 4.4e-53 213.4 270 50.7
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 2.2e-52 211.1 260 51.2
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 5.9e-50 203.0 270 48.1
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 1.8e-46 191.4 128 77.3
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.0e-45 188.0 244 49.6
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 3.7e-44 183.7 527 31.1
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 4.5e-42 176.8 258 42.2
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 5.4e-35 153.3 266 40.2
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.2e-31 142.1 196 43.9
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.5e-29 135.2 111 62.2
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 3.4e-29 134.0 169 47.9
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.8e-29 132.5 209 46.4
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 3.7e-28 130.6 206 38.8
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 9.5e-24 115.9 175 42.3
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 8.0e-23 112.8 164 50.0
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 2.3e-22 111.3 120 52.5
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.6e-21 107.8 58 86.2
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 7.5e-21 106.3 148 48.0
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 7.5e-21 106.3 149 48.3
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 2.2e-20 104.8 122 48.4
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 4.9e-20 103.6 74 70.3
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.1e-19 102.4 53 88.7
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.4e-19 102.1 142 50.0
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.3e-17 95.5 264 28.0
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 2.3e-17 94.7 77 62.3
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 6.6e-17 93.2 198 32.8
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 1.2e-15 89.0 137 48.9
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 2.3e-14 84.7 267 32.6
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 2.6e-13 81.3 86 47.7
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 4.4e-13 80.5 139 38.8
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 1.7e-09 68.6 63 52.4
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.6e-07 62.0 82 48.8
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 2.8e-07 61.2 47 61.7
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 3.6e-07 60.8 31 74.2


User provided reference genes

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