Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0468 Capsella rubella HOM05D003353 ORTHO05D003751 6.5e-125 450.7 217 100.0
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 1.1e-108 396.7 207 91.3
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 2.2e-104 382.5 207 88.4
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 5.4e-103 377.9 207 86.5
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 2.1e-99 365.9 207 83.6
Thhalv10022520m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 2.7e-99 365.5 207 83.6
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 6.3e-96 354.4 207 81.2
BolC5t35150H Brassica oleracea HOM05D003353 ORTHO05D003751 1.8e-95 352.8 207 79.7
C09p75140 Brassica napus HOM05D003353 ORTHO05D003751 1.2e-94 350.1 207 79.2
A05p44550 Brassica napus HOM05D003353 ORTHO05D003751 3.5e-94 348.6 207 78.7
BraA05t23202Z Brassica rapa HOM05D003353 ORTHO05D003751 7.7e-94 347.4 207 78.3
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 2.5e-92 342.4 207 78.7
BNapus_Darmor_BZH_scaffold_133p00020 Brassica napus HOM05D003353 ORTHO05D003751 7.0e-79 297.7 207 71.0
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 7.0e-79 297.7 207 71.0
BcaC09g47659 Brassica carinata HOM05D003353 ORTHO05D003751 1.6e-78 296.6 207 71.5
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 1.6e-78 296.6 207 71.5
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 3.4e-73 278.9 208 68.8
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 8.1e-67 257.7 216 62.0
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 9.3e-47 191.0 216 45.4
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 1.5e-44 183.7 218 45.9
FvH4_6g50560 Fragaria vesca HOM05D003353 ORTHO05D003751 1.9e-44 183.3 216 44.9
FAN05G2549 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.3e-44 182.6 216 45.8
FAN09G2719 Fragaria x ananassa HOM05D003353 ORTHO05D022659 3.3e-44 182.6 214 47.2
FAN09G4608 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.3e-44 182.6 214 47.2
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 3.3e-44 182.6 215 45.6
FAN14G4206 Fragaria x ananassa HOM05D003353 ORTHO05D003751 4.3e-44 182.2 216 44.4
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 7.4e-44 181.4 220 44.1
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 1.6e-43 180.3 210 47.6
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 2.8e-43 179.5 221 45.2
Lj2g0012220 Lotus japonicus HOM05D003353 ORTHO05D003751 2.8e-43 179.5 218 45.9
FAN02G2799 Fragaria x ananassa HOM05D003353 ORTHO05D003751 6.2e-43 178.3 214 46.3
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 1.1e-42 177.6 217 43.3
ClCG10G014330 Citrullus lanatus HOM05D003353 ORTHO05D003751 1.8e-42 176.8 216 45.4
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 4.0e-42 175.6 215 44.7
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 5.3e-42 175.3 215 46.0
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 9.0e-42 174.5 215 42.3
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 2.6e-41 172.9 217 43.8
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 2.2e-40 169.9 215 44.7
Sed0022584 Sechium edule HOM05D003353 ORTHO05D003751 3.8e-40 169.1 216 43.5
Cpa.g.sc215.7 Carica papaya HOM05D003353 ORTHO05D003751 4.9e-40 168.7 218 42.7
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 4.9e-40 168.7 215 44.2
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.9e-39 166.8 215 44.2
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 2.4e-39 166.4 216 47.7
CsaV3_3G042270 Cucumis sativus L. HOM05D003353 ORTHO05D003751 3.2e-39 166.0 216 44.0
CiPaw.04G024200 Carya illinoinensis HOM05D003353 ORTHO05D003751 9.3e-39 164.5 218 43.1
TWI12G0214 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 7.9e-38 161.4 214 42.5
TWI36G0997 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 6.7e-37 158.3 218 42.7
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 1.5e-36 157.1 223 40.8
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 2.5e-36 156.4 210 46.2
Potri.017G072580 Populus trichocarpa HOM05D003353 ORTHO05D003751 5.6e-36 155.2 207 46.9
Sc06g0001600 Simmondsia chinensis HOM05D003353 ORTHO05D003751 1.3e-35 154.1 230 39.6
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 2.8e-35 152.9 213 43.2
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 3.7e-35 152.5 204 39.7
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 4.0e-34 149.1 222 40.5
Lalb_Chr02g0160231 Lupinus albus HOM05D003353 ORTHO05D003751 9.0e-34 147.9 203 41.9
Medtr6g007650 Medicago truncatula HOM05D003353 ORTHO05D003751 1.2e-33 147.5 205 40.5
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 2.0e-33 146.7 287 34.8
MELO3C009946.2 Cucumis melo HOM05D003353 ORTHO05D003751 3.4e-33 146.0 206 42.2
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 3.4e-33 146.0 207 42.5
RcHm_v2.0_Chr2g0171081 Rosa chinensis HOM05D003353 ORTHO05D003751 4.5e-33 145.6 199 42.2
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 4.9e-32 142.1 225 39.6
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 1.1e-31 141.0 203 41.4
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 1.4e-31 140.6 208 39.9
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 9.3e-31 137.9 202 39.6
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 9.3e-31 137.9 226 37.2
Glyma.19G010200 Glycine max HOM05D003353 ORTHO05D003751 1.6e-30 137.1 206 38.3
Hund12469 Selenicereus undatus HOM05D003353 ORTHO05D003751 4.6e-30 135.6 218 37.6
Dinv35052 Davidia involucrata HOM05D003353 ORTHO05D003751 2.3e-29 133.3 225 36.4
PGR142G1415 Punica granatum HOM05D003353 ORTHO05D003751 9.6e-28 127.9 217 40.1
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 9.0e-26 121.3 220 35.5
EL10Ac2g03352 Beta vulgaris HOM05D003353 ORTHO05D003751 2.6e-25 119.8 226 38.1
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 8.5e-24 114.8 164 40.9
GSVIVG01032492001 Vitis vinifera HOM05D003353 ORTHO05D003751 5.1e-21 105.5 129 44.2
Dinv15308 Davidia involucrata HOM05D003353 ORTHO05D003751 9.7e-20 101.3 232 33.6
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 8.2e-19 98.2 232 33.2
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 3.1e-18 96.3 240 30.4
AUR62042408 Chenopodium quinoa HOM05D003353 ORTHO05D003751 9.1e-18 94.7 210 35.7
SHI25555 Sapria himalayana HOM05D003353 ORTHO05D003751 9.1e-18 94.7 71 57.7
AUR62032109 Chenopodium quinoa HOM05D003353 ORTHO05D003751 4.5e-17 92.4 210 33.3
Ca_04206_v3 Cicer arietinum L. HOM05D003353 ORTHO05D003751 1.0e-16 91.3 90 51.1
Lsat_1_v5_gn_8_157680 Lactuca sativa HOM05D003353 ORTHO05D003751 6.5e-16 88.6 213 31.0
Actinidia13514 Actinidia chinensis HOM05D003353 ORTHO05D003751 5.5e-15 85.5 200 32.0
QL03p061451 Quercus lobata HOM05D003353 ORTHO05D003751 5.5e-15 85.5 168 30.4
Manes.12G029600 Manihot esculenta HOM05D003353 ORTHO05D003751 1.2e-14 84.3 173 35.8
VMungo0464G0255 Vigna mungo HOM05D003353 ORTHO05D003751 2.7e-14 83.2 92 46.7
VMungo0464G0152 Vigna mungo HOM05D003353 ORTHO05D003751 1.4e-13 80.9 141 34.8
Lalb_Chr02g0160031 Lupinus albus HOM05D003353 ORTHO05D003751 2.3e-13 80.1 106 40.6
Lj7A591T75 Lonicera japonica HOM05D003353 ORTHO05D003751 3.9e-13 79.3 131 35.1
Aqoxy3G02993 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 5.1e-13 79.0 141 39.0
CSS0024625 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 2.6e-12 76.6 230 29.1
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 4.4e-12 75.9 223 29.6
ECA233G2073 Erigeron canadensis HOM05D003353 ORTHO05D003751 9.7e-12 74.7 212 30.7
Actinidia15041 Actinidia chinensis HOM05D003353 ORTHO05D003751 1.3e-11 74.3 177 31.6
DCAR_021679 Daucus carota HOM05D003353 ORTHO05D003751 8.2e-11 71.6 221 28.5
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 1.4e-10 70.9 156 30.8
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 1.4e-10 70.9 180 28.9
Eucgr.I01818 Eucalyptus grandis HOM05D003353 ORTHO05D003751 2.6e-09 66.6 137 33.6
CDE10G0339 Ceratophyllum demersum HOM05D003353 ORTHO05D003751 4.5e-09 65.9 68 44.1
HanXRQChr12g0368561 Helianthus annuus HOM05D003353 ORTHO05D003751 5.9e-09 65.5 213 26.8
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 1.0e-08 64.7 243 25.1
HanXRQChr17g0569791 Helianthus annuus HOM05D003353 ORTHO05D003751 2.9e-08 63.2 211 25.1
Lj7C591T5 Lonicera japonica HOM05D003353 ORTHO05D003751 3.8e-08 62.8 84 41.7
Hma1.2p1_0802F.1_g220460 Hydrangea macrophylla HOM05D003353 ORTHO05D003751 5.0e-08 62.4 65 49.2
Cc11_g14600 Coffea canephora HOM05D003353 ORTHO05D003751 8.5e-08 61.6 244 26.6
SGA_v2.0_scaffold165G38252 Striga asiatica HOM05D003353 ORTHO05D003751 3.2e-07 59.7 201 26.9
DCAR_007093 Daucus carota HOM05D003353 ORTHO05D003751 7.2e-07 58.5 244 24.6
AagrBONN_evm.TU.Sc2ySwM_228.838 Anthoceros agrestis HOM05D003353 ORTHO05D003751 1.6e-06 57.4 230 23.0
Lalb_Chr14g0362821 Lupinus albus HOM05D003353 ORTHO05D003751 1.6e-06 57.4 48 52.1
Migut.L01407 Erythranthe guttata HOM05D003353 ORTHO05D003751 4.7e-06 55.8 77 37.7


User provided reference genes

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