Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 8.1e-241 836.6 418 100.0
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 4.2e-197 691.4 420 85.7
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.1e-194 683.3 429 83.4
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 6.5e-190 667.5 426 83.1
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 4.4e-186 654.8 419 81.6
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.8e-184 649.4 424 80.4
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 1.3e-182 643.3 422 79.9
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 1.0e-179 633.6 430 78.6
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 6.8e-179 630.9 453 75.3
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.3e-177 626.7 384 86.2
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 1.3e-177 626.7 445 76.9
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.7e-174 616.3 449 74.6
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.6e-143 513.5 393 70.0
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 4.9e-137 491.9 412 63.8
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 4.2e-128 462.2 433 58.0
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 6.6e-126 454.9 413 58.4
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 6.6e-126 454.9 417 58.3
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 6.6e-126 454.9 423 58.2
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 9.6e-125 451.1 415 57.3
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 6.2e-124 448.4 417 58.3
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.4e-123 447.2 412 58.3
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 2.4e-123 446.4 466 54.3
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 3.4e-122 442.6 416 57.0
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 5.8e-122 441.8 412 57.5
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 2.9e-121 439.5 402 59.0
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 1.4e-120 437.2 416 57.2
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 3.2e-120 436.0 412 56.8
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 5.4e-120 435.3 407 57.2
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 7.1e-120 434.9 417 57.1
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.3e-118 430.6 407 56.5
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 3.0e-118 429.5 420 56.7
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 6.7e-118 428.3 407 56.3
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 1.1e-117 427.6 419 54.9
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 7.4e-117 424.9 423 54.4
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 3.7e-116 422.5 414 55.8
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 4.8e-116 422.2 420 55.2
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 1.1e-115 421.0 421 54.6
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.8e-115 420.2 428 54.0
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 2.4e-115 419.9 418 56.2
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.0e-115 419.1 409 55.0
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 6.9e-115 418.3 412 55.3
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 2.0e-114 416.8 428 53.0
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 3.4e-114 416.0 413 55.4
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 3.4e-114 416.0 418 53.6
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 2.9e-113 412.9 410 54.6
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 4.9e-113 412.1 413 56.2
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 4.9e-113 412.1 410 54.9
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 6.4e-113 411.8 413 55.2
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.4e-113 411.8 426 52.3
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.4e-113 411.4 411 53.8
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 8.4e-113 411.4 420 54.3
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 8.4e-113 411.4 418 53.3
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 1.1e-112 411.0 422 54.0
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 1.2e-111 407.5 407 54.8
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 1.6e-111 407.1 389 57.6
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 2.7e-111 406.4 415 54.0
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 2.7e-111 406.4 407 55.3
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 2.7e-111 406.4 382 57.1
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 6.0e-111 405.2 410 54.4
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 1.0e-110 404.4 410 55.1
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.3e-110 404.1 414 54.1
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 6.7e-110 401.7 357 60.2
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 6.7e-110 401.7 414 52.7
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.5e-109 400.6 355 60.0
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.9e-109 400.2 409 54.0
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 2.5e-109 399.8 430 52.1
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 2.1e-108 396.7 419 52.5
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 2.8e-108 396.4 424 51.7
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.8e-108 396.4 426 52.6
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 3.7e-108 396.0 414 53.1
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 6.2e-108 395.2 411 53.0
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 6.9e-107 391.7 424 51.4
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.0e-106 390.2 417 53.7
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 2.9e-105 386.3 414 52.7
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 2.5e-104 383.3 358 57.8
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 5.5e-104 382.1 384 54.7
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.5e-103 379.4 421 50.6
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 1.9e-101 373.6 484 45.9
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 1.2e-98 364.4 370 53.8
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 3.2e-96 356.3 348 55.5
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 9.3e-96 354.8 350 55.4
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.0e-94 351.3 347 54.2
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 2.3e-94 350.1 395 50.6
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 4.8e-92 342.4 373 50.4
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.4e-91 340.1 357 53.8
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.6e-90 336.7 410 47.8
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 1.4e-88 330.9 437 46.7
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 7.2e-88 328.6 315 57.5
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 5.1e-86 322.4 408 47.1
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 4.4e-85 319.3 383 47.8
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 9.7e-85 318.2 417 45.1
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.6e-82 310.1 387 46.8
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 2.5e-80 303.5 312 54.5
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 2.5e-80 303.5 276 58.0
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 7.2e-80 302.0 332 50.3
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 1.1e-77 294.7 351 48.7
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 1.7e-76 290.8 521 37.2
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 6.3e-76 288.9 276 56.9
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 4.5e-74 282.7 424 41.0
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 1.3e-73 281.2 224 62.5
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 1.2e-66 258.1 345 46.7
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.7e-65 254.2 515 34.0
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 1.5e-64 251.1 435 38.4
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 6.1e-63 245.7 301 48.8
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 3.4e-61 240.0 306 45.4
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 1.1e-59 235.0 276 49.6
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.4e-59 234.6 182 61.0
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.3e-57 228.0 218 55.0
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.7e-57 227.6 185 58.9
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 2.9e-57 226.9 232 55.2
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 3.4e-53 213.4 217 49.8
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 2.8e-52 210.3 428 39.0
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 8.3e-52 208.8 352 40.9
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 3.4e-45 186.8 412 36.2
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 7.5e-45 185.7 293 41.6
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 6.4e-44 182.6 253 41.1
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 6.8e-38 162.5 276 39.5
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 4.4e-37 159.8 187 44.9
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 1.7e-36 157.9 162 56.8
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 1.2e-34 151.8 420 32.1
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 8.6e-33 145.6 159 52.8
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 9.5e-32 142.1 146 56.2
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 1.8e-30 137.9 127 51.2
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.5e-29 134.8 108 55.6
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.7e-26 124.0 424 28.8
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 4.6e-26 123.2 127 48.8
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 1.1e-24 118.6 99 61.6
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 1.9e-24 117.9 87 66.7
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.5e-24 117.5 415 25.8
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.1e-23 114.4 819 21.9
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 1.1e-22 112.1 87 63.2
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 1.1e-22 112.1 135 46.7
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 8.9e-22 109.0 97 58.8
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.2e-19 100.5 149 43.6
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 3.6e-15 87.0 109 47.7
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 9.0e-14 82.4 247 28.3
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 4.6e-10 70.1 314 26.1
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 1.1e-08 65.5 270 26.3
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 6.9e-06 56.2 31 83.9


User provided reference genes

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