Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.6e-112 409.5 211 100.0
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.2e-111 404.4 211 99.1
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.2e-111 404.4 211 99.1
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 3.5e-83 312.0 212 79.2
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 2.1e-75 286.2 211 75.8
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 1.3e-72 276.9 213 72.3
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 2.1e-72 276.2 213 71.8
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 3.6e-72 275.4 213 72.3
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 1.8e-71 273.1 213 72.3
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 9.6e-65 250.8 212 68.9
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 3.5e-59 232.3 196 66.3
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 3.7e-56 222.2 212 63.2
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.0e-50 204.1 191 63.4
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 8.2e-48 194.5 218 54.1
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 1.4e-47 193.7 218 56.4
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 3.4e-46 189.1 190 57.4
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 4.5e-46 188.7 218 54.1
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 7.6e-46 188.0 188 57.4
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 6.5e-45 184.9 226 56.6
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 8.4e-45 184.5 226 56.6
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 9.3e-44 181.0 217 53.5
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 2.7e-43 179.5 173 64.7
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 2.3e-42 176.4 230 49.1
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.6e-40 170.2 215 49.8
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.2e-40 169.9 219 50.2
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 3.7e-40 169.1 215 51.6
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 6.3e-40 168.3 225 49.3
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 6.3e-40 168.3 225 49.3
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 2.4e-39 166.4 195 52.8
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.3e-39 165.2 219 49.3
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 5.3e-39 165.2 224 49.1
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 6.9e-39 164.9 220 50.0
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 9.0e-39 164.5 219 49.3
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 5.9e-38 161.8 217 51.2
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 7.7e-38 161.4 218 48.6
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 1.3e-37 160.6 217 47.9
TPR.G163 Trifolium pratense HOM05D003625 ORTHO05D004382 2.2e-37 159.8 143 67.1
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 3.2e-36 156.0 219 47.5
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 9.4e-36 154.5 218 49.1
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 1.6e-35 153.7 213 47.4
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 2.3e-34 149.8 217 49.8
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.0e-34 149.4 210 48.6
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 5.1e-34 148.7 195 48.7
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 8.8e-34 147.9 228 48.7
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 3.3e-33 146.0 212 47.2
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 4.3e-33 145.6 196 45.9
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 5.7e-33 145.2 192 51.0
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 2.2e-32 143.3 196 46.4
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 2.2e-32 143.3 210 46.7
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.8e-32 142.9 210 47.1
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 2.8e-32 142.9 165 55.2
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 8.2e-32 141.4 191 47.1
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.1e-31 141.0 191 47.1
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-31 141.0 196 45.4
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.4e-31 140.6 191 46.6
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 2.4e-31 139.8 192 47.4
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.1e-31 139.4 195 49.2
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 3.1e-31 139.4 219 46.1
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 6.9e-31 138.3 196 48.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 2.0e-30 136.7 196 45.4
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.6e-30 136.3 196 45.9
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.0e-29 134.4 191 46.1
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 1.0e-29 134.4 196 49.0
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 2.2e-29 133.3 200 46.5
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 2.9e-29 132.9 195 45.1
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 3.8e-29 132.5 224 41.5
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 5.0e-29 132.1 177 47.5
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 7.2e-28 128.3 214 45.8
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 7.2e-28 128.3 218 42.2
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 2.7e-27 126.3 231 42.4
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 3.0e-26 122.9 197 43.1
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.9e-26 122.5 198 43.9
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 2.0e-25 120.2 213 41.3
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 3.3e-25 119.4 216 42.6
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 1.7e-24 117.1 170 45.3
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.8e-23 113.6 197 43.1
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 7.0e-23 111.7 157 45.9
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 2.6e-22 109.8 120 51.7
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 4.5e-22 109.0 139 48.9
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.7e-21 107.1 191 40.3
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 3.8e-21 105.9 199 44.2
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 5.0e-21 105.5 185 41.6
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 5.0e-21 105.5 153 45.1
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 6.5e-21 105.1 141 48.2
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 6.5e-21 105.1 163 44.8
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 4.7e-19 99.0 173 39.3
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 1.4e-18 97.4 182 42.9
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 1.4e-18 97.4 161 46.0
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 2.3e-18 96.7 201 40.3
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 2.3e-18 96.7 170 41.8
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 2.3e-18 96.7 192 38.5
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.0e-18 96.3 193 38.3
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 6.7e-18 95.1 194 39.7
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 8.8e-18 94.7 165 44.2
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 2.0e-17 93.6 123 47.2
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 3.3e-17 92.8 182 40.1
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 3.3e-17 92.8 192 37.5
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 5.7e-17 92.0 184 37.0
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 9.7e-17 91.3 152 42.1
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 9.7e-17 91.3 152 42.1
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.3e-16 90.9 190 40.0
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 1.7e-16 90.5 162 44.4
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.7e-16 90.5 158 41.8
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.7e-16 90.5 187 38.0
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 2.8e-16 89.7 189 36.5
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 6.3e-16 88.6 211 37.4
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 8.2e-16 88.2 189 35.4
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 8.2e-16 88.2 189 35.4
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.8e-15 87.0 189 35.4
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.4e-15 86.7 67 67.2
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 3.1e-15 86.3 185 35.1
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 5.3e-15 85.5 172 40.1
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 5.9e-14 82.0 68 61.8
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 8.5e-13 78.2 114 43.0
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.5e-12 77.4 151 38.4
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.5e-12 76.6 165 36.4
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 2.5e-12 76.6 81 48.1
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 2.5e-12 76.6 81 48.1
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 9.4e-12 74.7 189 33.9
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.2e-11 74.3 62 61.3
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 3.6e-11 72.8 115 41.7
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 3.6e-11 72.8 66 57.6
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 8.0e-11 71.6 133 39.8
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 1.8e-10 70.5 117 40.2
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 4.0e-10 69.3 105 41.9
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 4.0e-10 69.3 175 32.0
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 1.4e-07 60.8 61 50.8
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 7.0e-07 58.5 113 37.2
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.6e-06 57.4 61 55.7
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 2.0e-06 57.0 83 43.4
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 7.7e-06 55.1 50 56.0


User provided reference genes

Program Settings