Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 6.9e-90 334.0 170 100.0
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 9.4e-71 270.4 183 82.0
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.5e-65 251.9 183 78.1
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 1.4e-58 229.9 182 70.9
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 1.8e-58 229.6 182 70.9
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 1.0e-53 213.8 189 63.5
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 1.4e-50 203.4 183 64.5
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 2.4e-50 202.6 190 61.6
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 9.2e-50 200.7 183 62.8
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 2.0e-49 199.5 183 63.4
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 3.9e-48 195.3 184 62.0
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 3.9e-48 195.3 184 62.5
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 3.9e-48 195.3 183 62.8
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 5.6e-47 191.4 182 63.2
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 9.5e-47 190.7 183 61.2
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 1.0e-45 187.2 185 59.5
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 6.4e-43 177.9 184 54.9
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 6.0e-41 171.4 182 54.9
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.3e-40 170.2 182 54.4
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.9e-39 166.4 186 54.3
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 2.5e-39 166.0 183 55.2
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 9.5e-39 164.1 183 53.0
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.5e-39 164.1 183 54.6
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.2e-38 163.7 189 51.3
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 2.8e-38 162.5 183 52.5
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 6.2e-38 161.4 183 54.6
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 8.1e-38 161.0 183 53.6
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 1.4e-37 160.2 183 53.6
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 2.3e-37 159.5 183 53.6
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 3.1e-37 159.1 182 53.3
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 4.0e-37 158.7 188 51.1
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 5.2e-37 158.3 183 51.9
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 8.9e-37 157.5 182 51.1
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 1.2e-36 157.1 183 51.9
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 4.4e-36 155.2 186 48.9
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 9.8e-36 154.1 182 51.6
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 9.8e-36 154.1 189 48.1
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.3e-35 153.7 190 49.5
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.7e-35 153.3 182 51.1
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.9e-35 152.5 183 51.4
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 2.9e-35 152.5 176 50.6
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 3.7e-35 152.1 174 54.0
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 6.4e-35 151.4 184 51.6
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.1e-34 150.6 191 49.2
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.1e-34 150.6 182 49.5
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.1e-34 150.6 182 50.5
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 1.9e-34 149.8 193 45.6
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.4e-34 149.4 169 54.4
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 2.4e-34 149.4 171 52.0
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 2.4e-34 149.4 182 50.5
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 2.4e-34 149.4 173 51.4
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 3.2e-34 149.1 184 50.5
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 4.1e-34 148.7 181 50.8
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 5.4e-34 148.3 165 54.5
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 5.4e-34 148.3 182 47.8
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 7.1e-34 147.9 190 47.9
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 7.1e-34 147.9 182 50.0
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 7.1e-34 147.9 182 50.0
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 9.2e-34 147.5 184 48.4
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 9.2e-34 147.5 188 48.9
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.2e-33 147.1 184 50.0
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 1.2e-33 147.1 188 48.4
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 1.2e-33 147.1 177 52.5
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.6e-33 146.7 184 50.0
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 2.1e-33 146.4 177 51.4
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 2.1e-33 146.4 186 48.9
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.7e-33 146.0 162 53.1
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 3.5e-33 145.6 182 48.4
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 4.6e-33 145.2 168 53.0
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 4.6e-33 145.2 183 49.2
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 7.8e-33 144.4 174 52.3
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.0e-32 144.1 182 48.9
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.0e-32 144.1 201 46.8
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.0e-32 144.1 179 50.3
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.3e-32 143.7 162 52.5
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.7e-32 143.3 187 50.3
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 1.7e-32 143.3 182 48.9
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 1.7e-32 143.3 183 50.8
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.7e-32 143.3 183 50.8
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-32 143.3 182 47.8
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 1.7e-32 143.3 203 46.3
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 2.3e-32 142.9 184 49.5
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.3e-32 142.9 183 50.8
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 2.3e-32 142.9 190 44.2
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 3.9e-32 142.1 174 52.3
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 3.9e-32 142.1 162 51.2
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 3.9e-32 142.1 182 48.9
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 3.9e-32 142.1 162 52.5
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.9e-32 142.1 194 47.4
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 6.6e-32 141.4 185 49.2
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 6.6e-32 141.4 182 47.3
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 8.6e-32 141.0 173 50.3
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.1e-31 140.6 173 50.3
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 1.5e-31 140.2 173 50.3
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 1.5e-31 140.2 173 49.7
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 1.5e-31 140.2 173 49.7
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 1.5e-31 140.2 173 49.7
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 1.5e-31 140.2 173 49.7
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.5e-31 140.2 167 51.5
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 1.5e-31 140.2 173 49.7
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.9e-31 139.8 170 51.2
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.5e-31 139.4 173 49.7
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.5e-31 139.4 167 50.9
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.5e-31 139.4 183 50.3
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 4.3e-31 138.7 184 47.8
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 4.3e-31 138.7 174 49.4
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.3e-31 138.7 183 49.7
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 4.3e-31 138.7 173 49.7
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 4.3e-31 138.7 173 48.6
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 7.3e-31 137.9 173 48.6
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 7.3e-31 137.9 172 48.3
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 9.5e-31 137.5 172 48.3
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 1.2e-30 137.1 171 48.5
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 1.6e-30 136.7 186 45.2
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 2.1e-30 136.3 173 48.0
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 3.6e-30 135.6 165 47.3
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 4.7e-30 135.2 174 49.4
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 4.4e-28 128.6 182 45.6
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 7.6e-28 127.9 168 48.2
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 4.1e-26 122.1 155 51.0
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 1.2e-22 110.5 184 43.5
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.8e-22 109.4 161 43.5
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 2.8e-22 109.4 167 45.5
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.8e-21 106.7 167 43.7
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 5.8e-20 101.7 160 42.5
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 4.9e-19 98.6 197 37.1
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 4.2e-18 95.5 192 37.5
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 1.7e-16 90.1 158 43.0
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 6.6e-16 88.2 98 54.1
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.9e-15 86.7 158 38.6
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 2.5e-15 86.3 182 37.9
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 3.3e-15 85.9 119 51.3
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 2.1e-14 83.2 50 78.0
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 1.1e-13 80.9 191 34.6
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.4e-13 80.5 54 68.5
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.8e-13 80.1 148 38.5
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 1.8e-13 80.1 55 67.3
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 4.5e-12 75.5 68 60.3
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 4.5e-12 75.5 194 28.9
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 7.6e-12 74.7 165 38.2
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 3.8e-11 72.4 67 52.2
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 5.4e-10 68.6 115 41.7
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.3e-08 63.9 66 42.4
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 5.1e-08 62.0 46 65.2
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 1.5e-07 60.5 97 40.2
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 5.6e-07 58.5 174 32.8
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 9.6e-07 57.8 64 50.0


User provided reference genes

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