Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 1.3e-61 239.6 120 100.0
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.7e-27 124.0 66 87.9
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 2.5e-25 119.0 66 84.8
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 3.6e-24 115.2 66 83.3
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 1.4e-23 113.2 66 78.8
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 4.0e-23 111.7 65 81.5
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 5.7e-22 107.8 65 78.5
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 9.7e-22 107.1 65 80.0
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 2.2e-21 105.9 65 80.0
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 6.3e-21 104.4 65 78.5
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 8.3e-21 104.0 65 78.5
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 8.3e-21 104.0 65 76.9
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 1.2e-19 100.1 65 76.9
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 2.7e-19 99.0 65 73.8
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 2.7e-19 99.0 65 75.4
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 5.9e-19 97.8 65 73.8
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 7.7e-19 97.4 65 73.8
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 7.7e-19 97.4 82 63.4
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 1.0e-18 97.1 65 72.3
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 1.3e-18 96.7 65 72.3
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 1.7e-18 96.3 65 75.4
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 2.2e-18 95.9 65 72.3
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 2.9e-18 95.5 65 72.3
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 2.9e-18 95.5 65 70.8
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 2.9e-18 95.5 66 69.7
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 3.8e-18 95.1 65 72.3
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 5.0e-18 94.7 66 72.7
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 8.5e-18 94.0 65 67.7
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 8.5e-18 94.0 65 72.3
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 8.5e-18 94.0 66 65.2
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 8.5e-18 94.0 66 65.2
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 8.5e-18 94.0 66 65.2
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 8.5e-18 94.0 66 65.2
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 8.5e-18 94.0 66 69.7
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 1.1e-17 93.6 65 66.2
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 1.1e-17 93.6 65 69.2
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.1e-17 93.6 65 67.7
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.1e-17 93.6 65 69.2
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.1e-17 93.6 65 69.2
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 1.5e-17 93.2 66 65.2
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 1.5e-17 93.2 66 65.2
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.5e-17 93.2 82 61.0
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 1.5e-17 93.2 114 52.6
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.5e-17 93.2 65 70.8
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 1.5e-17 93.2 65 69.2
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 1.5e-17 93.2 65 69.2
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 1.5e-17 93.2 65 69.2
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 1.5e-17 93.2 65 69.2
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.5e-17 93.2 65 67.7
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 1.5e-17 93.2 65 70.8
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.9e-17 92.8 65 66.2
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 1.9e-17 92.8 65 72.3
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.5e-17 92.4 66 69.7
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 2.5e-17 92.4 65 69.2
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 2.5e-17 92.4 65 70.8
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 3.2e-17 92.0 65 70.8
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 3.2e-17 92.0 66 63.6
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 3.2e-17 92.0 65 63.1
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 4.2e-17 91.7 65 66.2
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.2e-17 91.7 65 67.7
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 4.2e-17 91.7 65 67.7
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 4.2e-17 91.7 82 57.3
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 4.2e-17 91.7 65 67.7
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 4.2e-17 91.7 65 69.2
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 5.5e-17 91.3 65 67.7
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 5.5e-17 91.3 65 70.8
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 5.5e-17 91.3 65 66.2
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 5.5e-17 91.3 65 70.8
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 5.5e-17 91.3 65 69.2
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 5.5e-17 91.3 65 69.2
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 7.2e-17 90.9 66 63.6
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 7.2e-17 90.9 66 63.6
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 7.2e-17 90.9 66 63.6
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 7.2e-17 90.9 66 63.6
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 7.2e-17 90.9 112 50.9
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 7.2e-17 90.9 65 69.2
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 7.2e-17 90.9 65 69.2
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 7.2e-17 90.9 65 69.2
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 9.4e-17 90.5 114 52.6
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 9.4e-17 90.5 65 66.2
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 9.4e-17 90.5 65 67.7
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 9.4e-17 90.5 65 67.7
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 9.4e-17 90.5 65 69.2
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 1.2e-16 90.1 65 66.2
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.2e-16 90.1 65 66.2
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 1.2e-16 90.1 66 65.2
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 1.2e-16 90.1 65 70.8
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 1.6e-16 89.7 65 69.2
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 2.1e-16 89.4 65 66.2
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 2.1e-16 89.4 65 66.2
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 2.1e-16 89.4 114 50.9
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 2.1e-16 89.4 65 64.6
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 2.7e-16 89.0 66 62.1
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 2.7e-16 89.0 66 66.7
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 2.7e-16 89.0 114 52.6
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 2.7e-16 89.0 66 62.1
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 2.7e-16 89.0 65 66.2
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 3.6e-16 88.6 65 69.2
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 3.6e-16 88.6 65 63.1
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 4.7e-16 88.2 65 67.7
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 4.7e-16 88.2 88 58.0
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 4.7e-16 88.2 65 66.2
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 1.0e-15 87.0 65 66.2
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 1.4e-15 86.7 65 61.5
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 1.4e-15 86.7 65 61.5
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 1.4e-15 86.7 65 61.5
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 1.4e-15 86.7 65 61.5
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 1.4e-15 86.7 65 61.5
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.8e-15 86.3 65 63.1
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.3e-15 85.9 82 57.3
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 3.0e-15 85.5 65 63.1
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 4.0e-15 85.1 82 57.3
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 4.0e-15 85.1 65 63.1
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 4.0e-15 85.1 65 63.1
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.2e-15 84.7 65 64.6
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 5.2e-15 84.7 65 66.2
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 5.2e-15 84.7 65 63.1
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 6.8e-15 84.3 65 64.6
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 2.0e-14 82.8 66 60.6
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 2.0e-14 82.8 65 60.0
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 5.7e-14 81.3 65 61.5
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 5.7e-14 81.3 65 61.5
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 7.5e-14 80.9 89 50.6
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 1.3e-13 80.1 68 61.8
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 1.3e-13 80.1 47 78.7
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 4.8e-13 78.2 61 59.0
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 4.8e-13 78.2 64 54.7
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 6.3e-13 77.8 65 60.0
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 7.0e-12 74.3 100 45.0
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.0e-11 72.8 65 55.4
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.5e-11 71.6 63 57.1
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 5.9e-11 71.2 54 53.7
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 8.6e-10 67.4 43 62.8
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 7.5e-06 54.3 67 46.3
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 9.8e-06 53.9 26 84.6


User provided reference genes

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