Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27727_v3 Cicer arietinum L. HOM05D005507 ORTHO05D025048 4.4e-50 201.1 106 100.0
Phvul.010G010050 Phaseolus vulgaris HOM05D005507 ORTHO05D007316 1.2e-20 103.2 100 63.0
VMungo0331G0190 Vigna mungo HOM05D005507 ORTHO05D007316 1.2e-20 103.2 100 63.0
arahy.Tifrunner.gnm1.ann1.128L9Z Arachis hypogaea HOM05D005507 ORTHO05D007316 3.6e-20 101.7 104 60.6
Glyma.18G153300 Glycine max HOM05D005507 ORTHO05D007316 3.6e-20 101.7 94 64.9
Medtr4g021750 Medicago truncatula HOM05D005507 ORTHO05D007316 3.6e-20 101.7 102 63.7
arahy.Tifrunner.gnm1.ann1.CQ4D9K Arachis hypogaea HOM05D005507 ORTHO05D007316 4.7e-20 101.3 96 64.6
Lj3g0017176 Lotus japonicus HOM05D005507 ORTHO05D007316 1.8e-19 99.4 100 62.0
TPR.G5632 Trifolium pratense HOM05D005507 ORTHO05D007316 1.5e-18 96.3 97 62.9
Lalb_Chr12g0209571 Lupinus albus HOM05D005507 ORTHO05D007316 3.4e-18 95.1 103 57.3
Ca_19991_v3 Cicer arietinum L. HOM05D005507 ORTHO05D007316 4.4e-18 94.7 102 60.8
Thecc.05G038400 Theobroma cacao HOM05D005507 ORTHO05D007316 2.4e-16 89.0 93 54.8
FvH4_6g13600 Fragaria vesca HOM05D005507 ORTHO05D007316 3.2e-16 88.6 102 51.0
FAN14G4006 Fragaria x ananassa HOM05D005507 ORTHO05D007316 3.2e-16 88.6 102 51.0
HanXRQChr04g0125471 Helianthus annuus HOM05D005507 ORTHO05D007316 5.4e-16 87.8 102 52.9
ClCG04G008130 Citrullus lanatus HOM05D005507 ORTHO05D007316 9.2e-16 87.0 96 52.1
FAN02G3281 Fragaria x ananassa HOM05D005507 ORTHO05D007316 1.6e-15 86.3 102 49.0
Manes.08G080700 Manihot esculenta HOM05D005507 ORTHO05D007316 1.6e-15 86.3 93 53.8
RcHm_v2.0_Chr3g0466451 Rosa chinensis HOM05D005507 ORTHO05D007316 1.6e-15 86.3 99 52.5
GSVIVG01034161001 Vitis vinifera HOM05D005507 ORTHO05D007316 1.6e-15 86.3 93 54.8
FAN09G0180 Fragaria x ananassa HOM05D005507 ORTHO05D007316 2.7e-15 85.5 102 49.0
Lj2A93G83 Lonicera japonica HOM05D005507 ORTHO05D007316 2.7e-15 85.5 93 53.8
TAR623G0024 Trochodendron aralioides HOM05D005507 ORTHO05D007316 2.7e-15 85.5 95 53.7
Cpa.g.sc188.6 Carica papaya HOM05D005507 ORTHO05D007316 3.5e-15 85.1 93 52.7
CiPaw.09G193400 Carya illinoinensis HOM05D005507 ORTHO05D007316 6.0e-15 84.3 93 51.6
CsaV3_4G025060 Cucumis sativus L. HOM05D005507 ORTHO05D007316 7.8e-15 84.0 96 50.0
Eucgr.A01270 Eucalyptus grandis HOM05D005507 ORTHO05D007316 7.8e-15 84.0 95 50.5
Gohir.D09G151000 Gossypium hirsutum HOM05D005507 ORTHO05D007316 7.8e-15 84.0 90 52.2
Gorai.006G172300 Gossypium raimondii HOM05D005507 ORTHO05D007316 7.8e-15 84.0 90 52.2
CANSAT35G1404 Cannabis sativa HOM05D005507 ORTHO05D007316 1.0e-14 83.6 105 49.5
Dinv37165 Davidia involucrata HOM05D005507 ORTHO05D007316 1.3e-14 83.2 95 51.6
Cfa017367 Carpinus fangiana HOM05D005507 ORTHO05D007316 1.7e-14 82.8 93 51.6
Gohir.A09G155500 Gossypium hirsutum HOM05D005507 ORTHO05D007316 1.7e-14 82.8 90 51.1
Actinidia11260 Actinidia chinensis HOM05D005507 ORTHO05D007316 3.0e-14 82.0 95 50.5
CSS0025531 Camellia sinensis var. sinensis HOM05D005507 ORTHO05D007316 3.0e-14 82.0 95 51.6
MD12G1143000 Malus domestica HOM05D005507 ORTHO05D007316 3.0e-14 82.0 105 50.5
vmacro20162 Vaccinium macrocarpon HOM05D005507 ORTHO05D007316 3.0e-14 82.0 93 52.7
MSTRG.19080 Avicennia marina HOM05D005507 ORTHO05D007316 3.9e-14 81.6 93 48.4
Ciclev10011102m.g Citrus clementina HOM05D005507 ORTHO05D007316 3.9e-14 81.6 96 50.0
Rhsim05G0193600 Rhododendron simsii HOM05D005507 ORTHO05D007316 3.9e-14 81.6 95 52.6
SalBow3G2672 Salvia bowleyana HOM05D005507 ORTHO05D007316 3.9e-14 81.6 95 49.5
Migut.J00324 Erythranthe guttata HOM05D005507 ORTHO05D007316 5.1e-14 81.3 93 51.6
Lsat_1_v5_gn_8_85360 Lactuca sativa HOM05D005507 ORTHO05D007316 5.1e-14 81.3 102 50.0
DCAR_028747 Daucus carota HOM05D005507 ORTHO05D007316 8.6e-14 80.5 93 50.5
Hma1.2p1_0936F.1_g238770 Hydrangea macrophylla HOM05D005507 ORTHO05D007316 8.6e-14 80.5 89 52.8
MBI14_g36928_MAGBIO Magnolia biondii HOM05D005507 ORTHO05D007316 1.1e-13 80.1 98 51.0
MELO3C003135.2 Cucumis melo HOM05D005507 ORTHO05D007316 1.9e-13 79.3 96 47.9
MD04G1129900 Malus domestica HOM05D005507 ORTHO05D007316 1.9e-13 79.3 105 47.6
Oeu024341.2 Olea europaea HOM05D005507 ORTHO05D007316 1.9e-13 79.3 94 48.9
QL07p048577 Quercus lobata HOM05D005507 ORTHO05D007316 1.9e-13 79.3 108 45.4
Sed0014596 Sechium edule HOM05D005507 ORTHO05D007316 1.9e-13 79.3 90 51.1
Potri.006G086200 Populus trichocarpa HOM05D005507 ORTHO05D007316 3.3e-13 78.6 89 49.4
TAR633G0577 Trochodendron aralioides HOM05D005507 ORTHO05D007316 3.3e-13 78.6 96 46.9
Aqoxy2G02218 Aquilegia oxysepala HOM05D005507 ORTHO05D007316 4.3e-13 78.2 93 51.6
Haze_20804 Corylus avellana HOM05D005507 ORTHO05D007316 4.3e-13 78.2 91 50.5
TWI53G1275 Tripterygium wilfordii HOM05D005507 ORTHO05D007316 5.6e-13 77.8 93 49.5
Aa31LG1G22500 Aethionema arabicum HOM05D005507 ORTHO05D007316 7.3e-13 77.4 90 50.0
AUR62038110 Chenopodium quinoa HOM05D005507 ORTHO05D007316 9.5e-13 77.0 94 50.0
Sabra06G0065800 Salix brachista HOM05D005507 ORTHO05D007316 9.5e-13 77.0 89 48.3
Cc06_g02560 Coffea canephora HOM05D005507 ORTHO05D007316 1.2e-12 76.6 101 45.5
unitig_578.g15691 Utricularia gibba HOM05D005507 ORTHO05D007316 1.2e-12 76.6 93 48.4
Nn2g11133 Nelumbo nucifera HOM05D005507 ORTHO05D007316 1.6e-12 76.3 96 46.9
Hund10642 Selenicereus undatus HOM05D005507 ORTHO05D007316 1.6e-12 76.3 95 49.5
SGA_v2.0_scaffold75G24953 Striga asiatica HOM05D005507 ORTHO05D007316 1.6e-12 76.3 91 47.3
Atru.chr8.1984 Acer truncatum HOM05D005507 ORTHO05D007316 2.1e-12 75.9 92 46.7
AUR62025794 Chenopodium quinoa HOM05D005507 ORTHO05D007316 2.1e-12 75.9 94 48.9
Sopen09g005610 Solanum pennellii HOM05D005507 ORTHO05D007316 3.6e-12 75.1 96 49.0
PGSC0003DMG400008832 Solanum tuberosum HOM05D005507 ORTHO05D007316 4.7e-12 74.7 105 48.6
ECA236G2467 Erigeron canadensis HOM05D005507 ORTHO05D007316 6.2e-12 74.3 95 48.4
Solyc09g010870.4 Solanum lycopersicum HOM05D005507 ORTHO05D007316 6.2e-12 74.3 105 47.6
CAN.G499.3 Capsicum annuum HOM05D005507 ORTHO05D007316 8.1e-12 73.9 105 47.6
Thhalv10012718m.g Eutrema salsugineum HOM05D005507 ORTHO05D007316 1.1e-11 73.6 90 46.7
PGR004G0811 Punica granatum HOM05D005507 ORTHO05D007316 1.1e-11 73.6 105 46.7
THA.LOC104816267 Tarenaya hassleriana HOM05D005507 ORTHO05D007316 1.1e-11 73.6 93 45.2
EL10As1g23037 Beta vulgaris HOM05D005507 ORTHO05D007316 1.8e-11 72.8 94 46.8
Carub.0006s0109 Capsella rubella HOM05D005507 ORTHO05D007316 3.1e-11 72.0 90 46.7
AL6G11510 Arabidopsis lyrata HOM05D005507 ORTHO05D007316 5.2e-11 71.2 90 46.7
PSO151G0160 Papaver somniferum HOM05D005507 ORTHO05D007316 5.2e-11 71.2 99 46.5
PSO339G2235 Papaver somniferum HOM05D005507 ORTHO05D007316 5.2e-11 71.2 99 45.5
ATR0559G008 Amborella trichopoda HOM05D005507 ORTHO05D007316 6.8e-11 70.9 95 45.3
Sp6g40200 Schrenkiella parvula HOM05D005507 ORTHO05D007316 1.2e-10 70.1 90 44.4
CARHR211120 Cardamine hirsuta HOM05D005507 ORTHO05D007316 1.5e-10 69.7 90 45.6
BraA10t45368Z Brassica rapa HOM05D005507 ORTHO05D007316 2.0e-10 69.3 89 46.1
Zm00001eb148300 Zea mays HOM05D005507 ORTHO05D007316 2.0e-10 69.3 93 48.4
C09p74280 Brassica napus HOM05D005507 ORTHO05D007316 2.6e-10 68.9 89 46.1
BolC9t60161H Brassica oleracea HOM05D005507 ORTHO05D007316 2.6e-10 68.9 89 46.1
HPP92_018140 Vanilla planifolia HOM05D005507 ORTHO05D007316 2.6e-10 68.9 95 47.4
A10p33370 Brassica napus HOM05D005507 ORTHO05D007316 4.4e-10 68.2 89 46.1
AT5G02250 Arabidopsis thaliana HOM05D005507 ORTHO05D007316 7.6e-10 67.4 90 44.4
Ah.08g210340 Amaranthus hybridus HOM05D005507 ORTHO05D007316 1.7e-09 66.2 94 43.6
Ca_19986_v3 Cicer arietinum L. HOM05D005507 ORTHO05D007316 1.7e-09 66.2 35 91.4
Os01g0841800 Oryza sativa ssp. japonica HOM05D005507 ORTHO05D007316 2.2e-09 65.9 93 45.2
Lj3C966G5 Lonicera japonica HOM05D005507 ORTHO05D007316 4.9e-09 64.7 82 47.6
Nitab4.5_0000705g0210 Nicotiana tabacum HOM05D005507 ORTHO05D007316 1.4e-08 63.2 102 43.1
Nitab4.5_0011443g0010 Nicotiana tabacum HOM05D005507 ORTHO05D007316 2.4e-08 62.4 92 43.5
Psat0s2736g0080 Pisum sativum HOM05D066999 ORTHO05D025048 2.4e-08 62.4 52 69.2
CDE07G0172 Ceratophyllum demersum HOM05D005507 ORTHO05D007316 4.1e-08 61.6 95 40.0
CDE04G1833 Ceratophyllum demersum HOM05D005507 ORTHO05D007316 7.1e-08 60.8 95 40.0
COL.COLO4_14788 Corchorus olitorius HOM05D005507 ORTHO05D007316 6.0e-07 57.8 98 40.8
Lalb_Chr07g0193881 Lupinus albus HOM05D005507 ORTHO05D007316 6.6e-06 54.3 34 76.5


User provided reference genes

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