Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 3.3e-187 658.7 449 100.0
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.6e-122 443.7 422 75.8
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 2.1e-117 426.8 323 82.0
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 2.5e-107 393.3 440 68.4
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 3.3e-107 392.9 367 74.4
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 2.3e-100 370.2 365 71.0
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 8.8e-100 368.2 213 93.0
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 6.3e-98 362.1 213 92.5
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 3.1e-97 359.8 212 92.0
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.2e-96 357.8 371 73.0
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 3.8e-95 352.8 212 91.0
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 9.4e-94 348.2 214 86.9
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 3.6e-93 346.3 451 65.6
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 8.8e-92 341.7 302 71.2
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.5e-91 340.9 215 85.1
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 4.4e-91 339.3 215 84.2
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 4.4e-91 339.3 214 83.6
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 4.4e-91 339.3 214 84.6
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 1.7e-90 337.4 413 65.9
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 2.2e-90 337.0 214 83.2
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 3.7e-90 336.3 214 84.6
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 6.3e-90 335.5 224 83.0
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 8.2e-90 335.1 215 82.3
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.8e-89 334.0 210 84.8
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 1.8e-89 334.0 213 84.0
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 1.8e-89 334.0 263 73.8
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 2.4e-89 333.6 247 76.5
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 3.1e-89 333.2 214 84.1
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 3.1e-89 333.2 214 83.6
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 9.1e-89 331.6 297 67.0
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.2e-88 331.3 214 83.2
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 1.2e-88 331.3 265 74.7
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.6e-88 330.9 213 81.2
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 2.0e-88 330.5 214 81.8
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 2.6e-88 330.1 214 81.8
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 5.9e-88 328.9 214 82.2
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 7.7e-88 328.6 218 81.7
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 7.7e-88 328.6 208 85.6
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.0e-87 328.2 215 81.9
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 1.0e-87 328.2 267 74.9
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 1.0e-87 328.2 201 86.1
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 1.3e-87 327.8 202 83.7
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 2.2e-87 327.0 296 69.6
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 2.2e-87 327.0 268 72.0
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.2e-87 327.0 210 82.4
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.9e-87 326.6 210 82.4
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.9e-87 326.6 215 81.4
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 5.0e-87 325.9 214 82.7
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 6.5e-87 325.5 209 80.9
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 1.9e-86 323.9 296 69.3
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 1.9e-86 323.9 296 69.3
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 4.2e-86 322.8 260 75.4
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 4.2e-86 322.8 427 58.8
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 4.2e-86 322.8 214 79.9
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 5.5e-86 322.4 302 69.2
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 7.2e-86 322.0 260 75.4
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.2e-85 321.2 213 80.3
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 3.6e-85 319.7 379 63.6
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 3.6e-85 319.7 222 78.8
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 3.6e-85 319.7 457 55.6
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 4.7e-85 319.3 215 78.6
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 4.7e-85 319.3 205 82.4
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 6.1e-85 318.9 286 66.8
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 8.0e-85 318.5 210 81.0
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.0e-84 318.2 265 72.5
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 2.3e-84 317.0 378 57.9
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 4.0e-84 316.2 255 72.9
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 6.8e-84 315.5 255 73.7
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 8.8e-84 315.1 253 70.4
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 2.6e-83 313.5 407 66.1
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 3.4e-83 313.2 214 77.6
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.4e-83 313.2 483 54.0
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 4.4e-83 312.8 420 58.1
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 7.5e-83 312.0 367 59.7
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 1.3e-82 311.2 279 68.8
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 3.7e-82 309.7 196 83.7
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.8e-82 309.3 443 57.8
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 6.3e-82 308.9 363 59.5
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.8e-81 307.4 213 76.5
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 3.1e-81 306.6 431 55.7
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 1.2e-80 304.7 203 80.8
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 1.6e-80 304.3 424 59.4
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.0e-80 303.9 436 56.9
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 4.5e-80 302.8 276 67.0
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 7.7e-80 302.0 421 59.4
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 1.5e-78 297.7 196 79.6
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.9e-78 297.4 194 80.4
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 2.3e-76 290.4 266 62.8
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 5.2e-76 289.3 300 58.0
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 5.2e-76 289.3 271 64.2
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.2e-75 288.1 303 58.1
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 1.5e-75 287.7 183 80.9
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 2.2e-74 283.9 182 80.8
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 3.7e-74 283.1 419 53.9
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 4.5e-72 276.2 226 73.0
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 2.3e-71 273.9 411 57.2
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 1.6e-69 267.7 215 65.6
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 5.2e-68 262.7 190 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 3.4e-67 260.0 277 54.9
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.4e-65 254.6 199 69.3
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 2.0e-64 250.8 278 57.6
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 4.5e-64 249.6 157 85.4
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 8.6e-63 245.4 179 75.4
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.4e-60 238.0 186 69.9
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 2.2e-58 230.7 417 45.8
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 3.9e-55 219.9 172 70.9
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 1.1e-52 211.8 245 57.1
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.5e-40 170.2 145 60.0
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 2.3e-31 141.0 94 77.7
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 9.6e-30 135.6 103 75.7
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 6.9e-28 129.4 116 58.6
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 4.4e-27 126.7 201 38.8
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 5.4e-25 119.8 204 37.7
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 1.6e-24 118.2 82 78.0
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 1.0e-23 115.5 64 92.2
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 6.2e-21 106.3 67 79.1
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 4.0e-20 103.6 63 77.8
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 1.3e-18 98.6 56 87.5
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 2.9e-18 97.4 74 70.3
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.4e-17 95.1 142 46.5
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 5.4e-17 93.2 67 71.6
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.2e-16 92.0 180 35.6
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 3.9e-15 87.0 63 71.4
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.9e-15 87.0 107 45.8
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 5.1e-15 86.7 95 46.3
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.1e-14 85.5 168 34.5
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 7.4e-14 82.8 64 70.3
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 7.4e-14 82.8 203 28.6
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 9.0e-12 75.9 159 34.6
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 3.4e-11 73.9 127 50.4
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 7.1e-09 66.2 61 62.3
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 2.3e-07 61.2 35 80.0
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 1.1e-06 58.9 36 72.2
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 9.6e-06 55.8 148 25.7


User provided reference genes

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