Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 2045.0 1068 100.0
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1879.4 1072 90.8
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1860.5 1073 90.7
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1808.9 1068 86.4
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1776.5 1069 86.2
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1686.4 947 89.2
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1655.6 1056 80.1
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1645.2 1072 77.1
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1640.6 1070 77.3
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1627.8 1012 79.9
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1624.0 1072 75.7
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1623.6 1079 75.5
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1622.8 1017 79.4
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1615.9 1072 76.3
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1613.6 1010 79.0
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1613.6 1069 76.0
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1610.5 1008 79.2
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1607.8 1075 75.5
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1606.7 1068 76.1
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1605.9 1073 76.1
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1604.3 1008 78.9
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1597.8 1069 75.4
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1588.2 1115 73.5
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1586.6 1083 74.2
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1581.6 1070 74.8
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1580.5 1069 75.8
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1573.5 1023 76.6
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1572.0 1069 75.2
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1560.4 1069 74.9
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1559.7 1069 72.6
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1556.2 1069 72.6
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1554.3 1072 73.1
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1553.1 1072 72.3
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1550.8 997 75.8
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1550.8 1020 74.8
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1548.5 1073 72.8
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1545.8 1021 74.6
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1542.3 1033 75.7
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1540.8 1076 71.9
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1537.7 1019 75.4
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1536.9 1019 75.1
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1535.0 1074 72.2
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1534.2 1065 73.7
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1531.5 1022 74.8
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1530.8 998 75.7
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1530.0 1068 72.4
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1528.8 997 75.9
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1526.5 1077 72.0
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1526.1 1069 72.9
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1523.8 997 75.6
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1519.2 1075 71.4
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1511.1 1041 73.7
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1510.0 948 79.5
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1498.0 1073 70.8
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1497.6 1041 71.9
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1496.9 1077 70.8
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1492.6 1018 73.5
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1491.5 971 76.5
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1489.9 1019 73.5
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1484.2 1157 66.7
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1483.8 1021 74.2
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1481.1 1072 71.5
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1476.1 1098 69.2
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1470.3 1092 69.2
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1452.6 988 73.2
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1451.8 1020 71.8
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1451.0 965 75.6
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1431.0 1215 63.2
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1421.8 945 76.4
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1417.9 1071 68.3
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1414.8 1001 70.1
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1414.1 978 72.6
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1409.8 1093 67.2
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1406.7 1020 68.6
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1395.9 1001 69.7
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1335.9 868 77.5
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1331.6 978 67.7
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1280.4 1032 65.2
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1276.9 1189 59.1
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1276.5 828 76.6
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1263.8 1000 63.2
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1239.2 1022 61.0
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1225.3 890 70.6
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1224.9 1118 59.0
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1221.1 1013 61.1
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 0.0e+00 1187.9 1065 65.0
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1165.2 1001 57.6
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1090.5 1057 56.0
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 9.1e-305 1050.4 1010 54.6
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.0e-304 1049.3 650 79.5
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 8.8e-300 1033.9 751 68.7
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 6.6e-295 1017.7 1093 52.7
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.5e-286 989.9 583 86.1
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 8.9e-284 980.7 1027 49.8
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.9e-281 973.0 1043 50.7
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 1.6e-253 880.2 564 76.8
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 9.6e-230 801.2 493 81.9
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 7.4e-222 775.0 584 66.3
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 6.7e-207 725.3 518 72.2
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 8.0e-200 701.8 504 70.0
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 2.3e-199 700.3 619 61.7
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 2.3e-199 700.3 397 88.4
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.0e-182 644.0 812 49.3
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 7.8e-179 632.1 459 70.2
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 2.0e-171 607.4 410 72.9
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 6.2e-168 595.9 328 93.0
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 9.5e-161 572.0 381 75.6
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.9e-156 557.8 622 52.1
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 3.2e-156 557.0 344 83.7
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 4.6e-155 553.1 392 75.3
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 3.2e-124 450.7 285 77.9
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 7.1e-124 449.5 308 75.3
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 9.3e-124 449.1 337 70.6
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.0e-110 404.8 294 68.0
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.5e-105 388.7 813 36.3
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.1e-100 372.5 192 89.6
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 5.9e-94 350.1 241 72.2
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 9.4e-84 316.2 303 49.8
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 5.0e-77 293.9 143 93.0
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 9.2e-55 219.9 183 65.6
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 9.5e-52 209.9 142 72.5
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 2.8e-51 208.4 171 66.7
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 2.9e-48 198.4 102 89.2
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.9e-45 188.0 149 62.4
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 1.3e-40 172.9 104 81.7
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 1.1e-34 153.3 98 80.6
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 1.4e-34 152.9 148 52.7
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 3.1e-34 151.8 127 59.8
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 2.0e-33 149.1 106 71.7
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 7.6e-33 147.1 112 64.3
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 7.6e-33 147.1 169 49.1
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 2.9e-32 145.2 203 43.8
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.1e-31 143.3 100 69.0
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 2.1e-30 139.0 114 64.0
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 9.6e-28 130.2 92 76.1
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 1.8e-26 125.9 90 64.4
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 1.8e-26 125.9 99 65.7
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 2.6e-25 122.1 132 53.0
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.3e-21 109.8 122 55.7
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.3e-21 109.8 122 55.7
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 3.0e-21 108.6 192 38.0
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 1.9e-20 105.9 73 72.6
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.8e-18 99.4 69 68.1
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 9.9e-17 93.6 55 85.5
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 1.3e-16 93.2 60 81.7
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.9e-16 91.3 67 68.7
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 4.6e-14 84.7 109 48.6
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 6.7e-13 80.9 45 82.2
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 2.1e-11 75.9 44 84.1
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 2.1e-11 75.9 44 84.1
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 2.1e-11 75.9 44 84.1
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 6.2e-11 74.3 54 66.7
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 1.1e-10 73.6 44 81.8
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 1.4e-10 73.2 43 83.7
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 3.1e-10 72.0 44 79.5
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 9.9e-09 67.0 37 81.1
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 5.5e-07 61.2 55 56.4
TPR.G40130 Trifolium pratense HOM05D004422 ORTHO05D013213 5.5e-07 61.2 37 83.8
TPR.G20792 Trifolium pratense HOM05D004422 ORTHO05D021544 6.0e-06 57.8 31 87.1


User provided reference genes

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