Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25632_v3 Cicer arietinum L. HOM05D001776 ORTHO05D001771 1.1e-56 223.0 106 100.0
Ca_25630_v3 Cicer arietinum L. HOM05D001776 ORTHO05D001771 5.4e-48 194.1 96 97.9
Ca_25603_v3 Cicer arietinum L. HOM05D001776 ORTHO05D001771 6.8e-43 177.2 92 93.5
TPR.G21354 Trifolium pratense HOM05D001776 ORTHO05D001771 3.3e-29 131.7 93 75.3
Medtr6g093020 Medicago truncatula HOM05D001776 ORTHO05D001771 5.6e-29 131.0 98 72.4
Medtr3g435450 Medicago truncatula HOM05D001776 ORTHO05D001771 7.8e-23 110.5 96 61.5
Lj2g0010885 Lotus japonicus HOM05D001776 ORTHO05D001771 1.9e-21 105.9 112 57.1
Medtr3g435470 Medicago truncatula HOM05D001776 ORTHO05D001771 4.7e-20 101.3 95 57.9
Phvul.004G177500 Phaseolus vulgaris HOM05D001776 ORTHO05D001771 4.7e-20 101.3 107 55.1
arahy.Tifrunner.gnm1.ann1.N90ILP Arachis hypogaea HOM05D001776 ORTHO05D001771 2.3e-19 99.0 103 52.4
arahy.Tifrunner.gnm1.ann1.QSQE7C Arachis hypogaea HOM05D001776 ORTHO05D001771 2.3e-19 99.0 103 52.4
Glyma.07G130300 Glycine max HOM05D001776 ORTHO05D001771 4.0e-19 98.2 111 55.9
Cfa020736 Carpinus fangiana HOM05D001776 ORTHO05D001771 8.9e-19 97.1 101 55.4
VMungo0464G1505 Vigna mungo HOM05D001776 ORTHO05D001771 5.8e-18 94.4 107 52.3
QL11p009249 Quercus lobata HOM05D001776 ORTHO05D001771 1.3e-17 93.2 97 49.5
Lalb_Chr24g0401801 Lupinus albus HOM05D001776 ORTHO05D001771 4.9e-17 91.3 98 53.1
Cpa.g.sc115.32 Carica papaya HOM05D001776 ORTHO05D001771 3.2e-16 88.6 103 51.5
Eucgr.C00067 Eucalyptus grandis HOM05D001776 ORTHO05D001771 3.2e-16 88.6 100 47.0
Atru.chr7.974 Acer truncatum HOM05D001776 ORTHO05D001771 7.1e-16 87.4 101 51.5
Haze_19051 Corylus avellana HOM05D001776 ORTHO05D001771 7.1e-16 87.4 98 53.1
Hma1.2p1_0284F.1_g113830 Hydrangea macrophylla HOM05D001776 ORTHO05D001771 7.1e-16 87.4 100 52.0
Manes.15G099400 Manihot esculenta HOM05D001776 ORTHO05D001771 7.1e-16 87.4 98 52.0
Actinidia02483 Actinidia chinensis HOM05D001776 ORTHO05D001771 9.2e-16 87.0 111 41.4
Duzib150G1194 Durio zibethinus HOM05D001776 ORTHO05D001771 9.2e-16 87.0 94 53.2
Glyma.01G002200 Glycine max HOM05D001776 ORTHO05D001771 9.2e-16 87.0 104 52.9
Gohir.A05G001300 Gossypium hirsutum HOM05D001776 ORTHO05D001771 9.2e-16 87.0 96 52.1
CANSAT80G0007 Cannabis sativa HOM05D001776 ORTHO05D001771 1.6e-15 86.3 98 50.0
Duzib168G1817 Durio zibethinus HOM05D001776 ORTHO05D001771 1.6e-15 86.3 93 52.7
Gohir.D05G001600 Gossypium hirsutum HOM05D001776 ORTHO05D001771 2.1e-15 85.9 96 52.1
Gorai.009G001500 Gossypium raimondii HOM05D001776 ORTHO05D001771 2.1e-15 85.9 96 52.1
Dinv26467 Davidia involucrata HOM05D001776 ORTHO05D001771 4.6e-15 84.7 106 43.4
Hma1.2p1_0314F.1_g121970 Hydrangea macrophylla HOM05D001776 ORTHO05D001771 4.6e-15 84.7 110 42.7
Dinv12597 Davidia involucrata HOM05D001776 ORTHO05D001771 6.0e-15 84.3 106 46.2
FvH4_4g06240 Fragaria vesca HOM05D001776 ORTHO05D001771 6.0e-15 84.3 97 47.4
FAN07G0851 Fragaria x ananassa HOM05D001776 ORTHO05D001771 6.0e-15 84.3 97 47.4
FAN17G1350 Fragaria x ananassa HOM05D001776 ORTHO05D001771 6.0e-15 84.3 97 47.4
FAN22G1406 Fragaria x ananassa HOM05D001776 ORTHO05D001771 6.0e-15 84.3 97 47.4
RcHm_v2.0_Chr4g0397961 Rosa chinensis HOM05D001776 ORTHO05D001771 6.0e-15 84.3 97 47.4
Actinidia31883 Actinidia chinensis HOM05D001776 ORTHO05D001771 7.8e-15 84.0 112 39.3
GSVIVG01032322001 Vitis vinifera HOM05D001776 ORTHO05D001771 1.3e-14 83.2 102 47.1
Actinidia13370 Actinidia chinensis HOM05D001776 ORTHO05D001771 3.0e-14 82.0 109 39.4
FAN12G2880 Fragaria x ananassa HOM05D001776 ORTHO05D001771 3.0e-14 82.0 97 46.4
Medtr3g037440 Medicago truncatula HOM05D001776 ORTHO05D001771 3.0e-14 82.0 96 51.0
Peaxi162Scf00954g00319 Petunia axillaris HOM05D001776 ORTHO05D001771 5.1e-14 81.3 104 46.2
Thecc.09G194000 Theobroma cacao HOM05D001776 ORTHO05D001771 8.6e-14 80.5 97 49.5
QL11p011525 Quercus lobata HOM05D001776 ORTHO05D001771 1.5e-13 79.7 97 43.3
CSS0006410 Camellia sinensis var. sinensis HOM05D001776 ORTHO05D001771 5.6e-13 77.8 113 39.8
Aa31LG9G5220 Aethionema arabicum HOM05D001776 ORTHO05D001771 7.3e-13 77.4 101 46.5
CiPaw.15G155200 Carya illinoinensis HOM05D001776 ORTHO05D001771 7.3e-13 77.4 96 47.9
CiPaw.16G103200 Carya illinoinensis HOM05D001776 ORTHO05D001771 9.5e-13 77.0 95 45.3
Ciclev10008843m.g Citrus clementina HOM05D001776 ORTHO05D001771 1.6e-12 76.3 95 46.3
PSO063G5421 Papaver somniferum HOM05D001776 ORTHO05D001771 1.6e-12 76.3 105 48.6
Prupe.1G065600 Prunus persica HOM05D001776 ORTHO05D001771 1.6e-12 76.3 110 44.5
PGR142G2549 Punica granatum HOM05D001776 ORTHO05D001771 1.6e-12 76.3 76 51.3
Nn8g41094 Nelumbo nucifera HOM05D001776 ORTHO05D001771 2.1e-12 75.9 113 43.4
Potri.018G145500 Populus trichocarpa HOM05D001776 ORTHO05D001771 2.1e-12 75.9 100 48.0
Potri.018G146700 Populus trichocarpa HOM05D001776 ORTHO05D001771 2.1e-12 75.9 105 46.7
MELO3C003942.2 Cucumis melo HOM05D001776 ORTHO05D001771 2.8e-12 75.5 94 44.7
MBI13_g34294_MAGBIO Magnolia biondii HOM05D001776 ORTHO05D001771 2.8e-12 75.5 113 41.6
Medtr3g037400 Medicago truncatula HOM05D008161 ORTHO05D001771 2.8e-12 75.5 95 52.6
TWI32G0050 Tripterygium wilfordii HOM05D001776 ORTHO05D001771 2.8e-12 75.5 98 49.0
Actinidia38521 Actinidia chinensis HOM05D001776 ORTHO05D001771 4.7e-12 74.7 108 40.7
EL10Ac2g03640 Beta vulgaris HOM05D001776 ORTHO05D001771 1.4e-11 73.2 106 42.5
CsaV3_2G009010 Cucumis sativus L. HOM05D001776 ORTHO05D001771 1.4e-11 73.2 94 43.6
Nitab4.5_0004188g0070 Nicotiana tabacum HOM05D001776 ORTHO05D001771 1.4e-11 73.2 98 42.9
MD16G1239500 Malus domestica HOM05D001776 ORTHO05D001771 2.3e-11 72.4 113 41.6
CSS0027028 Camellia sinensis var. sinensis HOM05D001776 ORTHO05D001771 4.0e-11 71.6 106 44.3
AUR62028014 Chenopodium quinoa HOM05D001776 ORTHO05D001771 5.2e-11 71.2 105 41.0
Cc00_g00460 Coffea canephora HOM05D001776 ORTHO05D001771 5.2e-11 71.2 103 41.7
COL.COLO4_33454 Corchorus olitorius HOM05D001776 ORTHO05D001771 5.2e-11 71.2 84 50.0
Sc23g0004330 Simmondsia chinensis HOM05D001776 ORTHO05D001771 5.2e-11 71.2 97 42.3
Ah.11g044270 Amaranthus hybridus HOM05D001776 ORTHO05D001771 6.8e-11 70.9 102 43.1
MSTRG.10463 Avicennia marina HOM05D001776 ORTHO05D001771 6.8e-11 70.9 97 39.2
SGA_v2.0_scaffold21G09625 Striga asiatica HOM05D001776 ORTHO05D001771 6.8e-11 70.9 103 42.7
vmacro20780 Vaccinium macrocarpon HOM05D001776 ORTHO05D001771 6.8e-11 70.9 94 43.6
Aqoxy7G02693 Aquilegia oxysepala HOM05D001776 ORTHO05D001771 8.9e-11 70.5 103 41.7
ClCG11G011500 Citrullus lanatus HOM05D001776 ORTHO05D001771 8.9e-11 70.5 92 44.6
Lsat_1_v5_gn_5_82421 Lactuca sativa HOM05D001776 ORTHO05D001771 8.9e-11 70.5 47 68.1
TWI34G1874 Tripterygium wilfordii HOM05D001776 ORTHO05D001771 1.2e-10 70.1 116 40.5
unitig_899.g15185 Utricularia gibba HOM05D005244 ORTHO05D006539 1.5e-10 69.7 85 45.9
AUR62020710 Chenopodium quinoa HOM05D001776 ORTHO05D001771 2.0e-10 69.3 105 40.0
PGSC0003DMG400013699 Solanum tuberosum HOM05D001776 ORTHO05D001771 2.0e-10 69.3 96 41.7
THA.LOC104815317 Tarenaya hassleriana HOM05D001776 ORTHO05D001771 2.0e-10 69.3 105 41.9
TAR626G1512 Trochodendron aralioides HOM05D001776 ORTHO05D001771 2.0e-10 69.3 70 48.6
vmacro22291 Vaccinium macrocarpon HOM05D001776 ORTHO05D001771 2.0e-10 69.3 108 42.6
AL7G44140 Arabidopsis lyrata HOM05D001776 ORTHO05D001771 2.6e-10 68.9 95 41.1
TAR383G0816 Trochodendron aralioides HOM05D001776 ORTHO05D001771 2.6e-10 68.9 101 37.6
A08p09650 Brassica napus HOM05D001776 ORTHO05D001771 4.4e-10 68.2 54 57.4
BraA08t32962Z Brassica rapa HOM05D001776 ORTHO05D001771 4.4e-10 68.2 54 57.4
Peaxi162Scf00320g00413 Petunia axillaris HOM05D001776 ORTHO05D001771 4.4e-10 68.2 98 43.9
CAN.G106.15 Capsicum annuum HOM05D001776 ORTHO05D001771 5.8e-10 67.8 102 39.2
Hund19364 Selenicereus undatus HOM05D001776 ORTHO05D001771 7.6e-10 67.4 110 38.2
THA.LOC104808910 Tarenaya hassleriana HOM05D001776 ORTHO05D001771 7.6e-10 67.4 89 38.2
Sopen05g027760 Solanum pennellii HOM05D000002 ORTHO05D000001 9.9e-10 67.0 96 40.6
Sed0013888 Sechium edule HOM05D001776 ORTHO05D001771 1.3e-09 66.6 99 42.4
BcaC07g37670 Brassica carinata HOM05D001776 ORTHO05D001771 1.7e-09 66.2 43 67.4
BolC8t48040H Brassica oleracea HOM05D001776 ORTHO05D001771 1.7e-09 66.2 43 67.4
BcaB04g18054 Brassica carinata HOM05D001776 ORTHO05D001771 2.2e-09 65.9 43 67.4
Oeu057461.1 Olea europaea HOM05D001776 ORTHO05D001771 2.2e-09 65.9 94 42.6
Potri.006G077600 Populus trichocarpa HOM05D001776 ORTHO05D001771 2.2e-09 65.9 90 53.3
Thhalv10003457m.g Eutrema salsugineum HOM05D001776 ORTHO05D001771 3.8e-09 65.1 42 69.0
Nitab4.5_0005411g0070 Nicotiana tabacum HOM05D001776 ORTHO05D001771 3.8e-09 65.1 39 69.2
Rhsim03G0268500 Rhododendron simsii HOM05D001776 ORTHO05D001771 3.8e-09 65.1 77 45.5
SGA_v2.0_scaffold693G53460 Striga asiatica HOM05D001776 ORTHO05D001771 3.8e-09 65.1 106 37.7
MSTRG.26521 Avicennia marina HOM05D001776 ORTHO05D001771 6.4e-09 64.3 74 47.3
CDE04G2318 Ceratophyllum demersum HOM05D001776 ORTHO05D001771 6.4e-09 64.3 68 47.1
Sabra06G0058700 Salix brachista HOM05D001776 ORTHO05D001771 6.4e-09 64.3 36 80.6
SalBow6G0354 Salvia bowleyana HOM05D001776 ORTHO05D001771 6.4e-09 64.3 38 73.7
AT5G35330 Arabidopsis thaliana HOM05D001776 ORTHO05D001771 1.1e-08 63.5 97 37.1
HPP92_010798 Vanilla planifolia HOM05D001776 ORTHO05D001771 1.1e-08 63.5 98 34.7
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 1.4e-08 63.2 57 52.6
TPR.G21362 Trifolium pratense HOM05D001776 ORTHO05D001771 1.4e-08 63.2 43 74.4
CARHR217370 Cardamine hirsuta HOM05D001776 ORTHO05D001771 2.4e-08 62.4 42 64.3
Os09g0494300 Oryza sativa ssp. japonica HOM05D001776 ORTHO05D001771 2.4e-08 62.4 65 43.1
Migut.B00848 Erythranthe guttata HOM05D001776 ORTHO05D001771 3.2e-08 62.0 95 38.9
HanXRQChr09g0245901 Helianthus annuus HOM05D001776 ORTHO05D001771 4.1e-08 61.6 101 39.6
Nitab4.5_0001205g0020 Nicotiana tabacum HOM05D001776 ORTHO05D001771 4.1e-08 61.6 78 47.4
HanXRQChr12g0359211 Helianthus annuus HOM05D001776 ORTHO05D001771 5.4e-08 61.2 71 47.9
ECA234G3906 Erigeron canadensis HOM05D001776 ORTHO05D001771 7.1e-08 60.8 95 40.0
CDE07G1244 Ceratophyllum demersum HOM05D002718 ORTHO05D003027 9.2e-08 60.5 39 66.7
Nitab4.5_0000413g0060 Nicotiana tabacum HOM05D001776 ORTHO05D001771 9.2e-08 60.5 75 48.0
PSO478G1737 Papaver somniferum HOM05D001776 ORTHO05D001771 1.2e-07 60.1 104 38.5
SGA_v2.0_scaffold31G12721 Striga asiatica HOM05D001776 ORTHO05D001771 1.2e-07 60.1 95 38.9
PSO017G4274 Papaver somniferum HOM05D001776 ORTHO05D001771 1.6e-07 59.7 104 38.5
Nn2g12782 Nelumbo nucifera HOM05D001776 ORTHO05D001771 2.1e-07 59.3 38 63.2
SEGI_01377 Sequoiadendron giganteum HOM05D001776 ORTHO05D001771 2.1e-07 59.3 76 46.1
Carub.0007s3115 Capsella rubella HOM05D001776 ORTHO05D001771 3.5e-07 58.5 97 37.1
Zm00001eb120500 Zea mays HOM05D001776 ORTHO05D001771 3.5e-07 58.5 105 33.3
ECA240G0360 Erigeron canadensis HOM05D001776 ORTHO05D001771 7.8e-07 57.4 106 34.9
Zm00001eb102090 Zea mays HOM05D001776 ORTHO05D001771 1.0e-06 57.0 101 34.7
HanXRQChr03g0067341 Helianthus annuus HOM05D001776 ORTHO05D001771 3.0e-06 55.5 112 33.9
Oeu000375.3 Olea europaea HOM05D001776 ORTHO05D001771 3.9e-06 55.1 41 61.0
HPP92_017094 Vanilla planifolia HOM05D001776 ORTHO05D001771 6.6e-06 54.3 56 44.6
AT5G35338 Arabidopsis thaliana HOM05D001776 ORTHO05D001771 8.6e-06 53.9 36 63.9
Thhalv10003468m.g Eutrema salsugineum HOM05D001776 ORTHO05D001771 8.6e-06 53.9 39 59.0


User provided reference genes

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