Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25603_v3 Cicer arietinum L. HOM05D001776 ORTHO05D001771 6.1e-48 193.7 92 100.0
Ca_25630_v3 Cicer arietinum L. HOM05D001776 ORTHO05D001771 1.2e-43 179.5 92 94.6
Ca_25632_v3 Cicer arietinum L. HOM05D001776 ORTHO05D001771 2.6e-43 178.3 92 93.5
Medtr6g093020 Medicago truncatula HOM05D001776 ORTHO05D001771 1.7e-29 132.5 95 74.7
TPR.G21354 Trifolium pratense HOM05D001776 ORTHO05D001771 1.8e-28 129.0 88 76.1
Medtr3g435450 Medicago truncatula HOM05D001776 ORTHO05D001771 1.2e-24 116.3 93 65.6
Medtr3g435470 Medicago truncatula HOM05D001776 ORTHO05D001771 7.5e-22 107.1 91 61.5
Phvul.004G177500 Phaseolus vulgaris HOM05D001776 ORTHO05D001771 2.8e-21 105.1 102 58.8
Lj2g0010885 Lotus japonicus HOM05D001776 ORTHO05D001771 1.1e-20 103.2 107 57.0
Glyma.07G130300 Glycine max HOM05D001776 ORTHO05D001771 2.4e-20 102.1 107 57.9
arahy.Tifrunner.gnm1.ann1.N90ILP Arachis hypogaea HOM05D001776 ORTHO05D001771 5.4e-20 100.9 99 54.5
arahy.Tifrunner.gnm1.ann1.QSQE7C Arachis hypogaea HOM05D001776 ORTHO05D001771 5.4e-20 100.9 99 54.5
Lalb_Chr24g0401801 Lupinus albus HOM05D001776 ORTHO05D001771 2.2e-18 95.5 96 57.3
QL11p009249 Quercus lobata HOM05D001776 ORTHO05D001771 2.2e-18 95.5 93 51.6
VMungo0464G1505 Vigna mungo HOM05D001776 ORTHO05D001771 8.5e-18 93.6 102 53.9
Cfa020736 Carpinus fangiana HOM05D001776 ORTHO05D001771 1.1e-17 93.2 97 55.7
Manes.15G099400 Manihot esculenta HOM05D001776 ORTHO05D001771 4.2e-17 91.3 94 55.3
Eucgr.C00067 Eucalyptus grandis HOM05D001776 ORTHO05D001771 9.5e-17 90.1 96 49.0
Glyma.01G002200 Glycine max HOM05D001776 ORTHO05D001771 9.5e-17 90.1 100 56.0
Atru.chr7.974 Acer truncatum HOM05D001776 ORTHO05D001771 1.6e-16 89.4 97 53.6
Gohir.A05G001300 Gossypium hirsutum HOM05D001776 ORTHO05D001771 1.6e-16 89.4 92 54.3
CANSAT80G0007 Cannabis sativa HOM05D001776 ORTHO05D001771 2.1e-16 89.0 94 52.1
Duzib168G1817 Durio zibethinus HOM05D001776 ORTHO05D001771 2.1e-16 89.0 91 54.9
Gohir.D05G001600 Gossypium hirsutum HOM05D001776 ORTHO05D001771 3.6e-16 88.2 92 54.3
Gorai.009G001500 Gossypium raimondii HOM05D001776 ORTHO05D001771 3.6e-16 88.2 92 54.3
Thecc.09G194000 Theobroma cacao HOM05D001776 ORTHO05D001771 3.6e-16 88.2 93 53.8
Duzib150G1194 Durio zibethinus HOM05D001776 ORTHO05D001771 8.0e-16 87.0 90 53.3
Actinidia02483 Actinidia chinensis HOM05D001776 ORTHO05D001771 1.4e-15 86.3 107 42.1
Haze_19051 Corylus avellana HOM05D001776 ORTHO05D001771 1.4e-15 86.3 93 55.9
Actinidia31883 Actinidia chinensis HOM05D001776 ORTHO05D001771 1.8e-15 85.9 108 40.7
Cpa.g.sc115.32 Carica papaya HOM05D001776 ORTHO05D001771 1.8e-15 85.9 99 52.5
QL11p011525 Quercus lobata HOM05D001776 ORTHO05D001771 1.8e-15 85.9 93 47.3
FvH4_4g06240 Fragaria vesca HOM05D001776 ORTHO05D001771 3.0e-15 85.1 93 48.4
FAN07G0851 Fragaria x ananassa HOM05D001776 ORTHO05D001771 3.0e-15 85.1 93 48.4
FAN17G1350 Fragaria x ananassa HOM05D001776 ORTHO05D001771 3.0e-15 85.1 93 48.4
FAN22G1406 Fragaria x ananassa HOM05D001776 ORTHO05D001771 3.0e-15 85.1 93 48.4
RcHm_v2.0_Chr4g0397961 Rosa chinensis HOM05D001776 ORTHO05D001771 3.0e-15 85.1 93 48.4
Dinv26467 Davidia involucrata HOM05D001776 ORTHO05D001771 4.0e-15 84.7 102 43.1
GSVIVG01032322001 Vitis vinifera HOM05D001776 ORTHO05D001771 4.0e-15 84.7 98 49.0
Dinv12597 Davidia involucrata HOM05D001776 ORTHO05D001771 5.2e-15 84.3 102 46.1
Hma1.2p1_0314F.1_g121970 Hydrangea macrophylla HOM05D001776 ORTHO05D001771 5.2e-15 84.3 106 42.5
Actinidia13370 Actinidia chinensis HOM05D001776 ORTHO05D001771 8.8e-15 83.6 107 41.1
FAN12G2880 Fragaria x ananassa HOM05D001776 ORTHO05D001771 1.5e-14 82.8 93 47.3
Hma1.2p1_0284F.1_g113830 Hydrangea macrophylla HOM05D001776 ORTHO05D001771 2.0e-14 82.4 95 52.6
Nn8g41094 Nelumbo nucifera HOM05D001776 ORTHO05D001771 2.6e-14 82.0 109 45.9
TWI32G0050 Tripterygium wilfordii HOM05D001776 ORTHO05D001771 3.4e-14 81.6 94 52.1
PSO063G5421 Papaver somniferum HOM05D001776 ORTHO05D001771 4.4e-14 81.3 100 51.0
Medtr3g037440 Medicago truncatula HOM05D001776 ORTHO05D001771 7.5e-14 80.5 94 51.1
CSS0006410 Camellia sinensis var. sinensis HOM05D001776 ORTHO05D001771 1.3e-13 79.7 109 41.3
Aa31LG9G5220 Aethionema arabicum HOM05D001776 ORTHO05D001771 1.7e-13 79.3 96 46.9
Peaxi162Scf00954g00319 Petunia axillaris HOM05D001776 ORTHO05D001771 1.7e-13 79.3 99 45.5
PGR142G2549 Punica granatum HOM05D001776 ORTHO05D001771 1.7e-13 79.3 72 55.6
CiPaw.15G155200 Carya illinoinensis HOM05D001776 ORTHO05D001771 3.7e-13 78.2 91 50.5
Ciclev10008843m.g Citrus clementina HOM05D001776 ORTHO05D001771 3.7e-13 78.2 91 48.4
MELO3C003942.2 Cucumis melo HOM05D001776 ORTHO05D001771 3.7e-13 78.2 90 45.6
CiPaw.16G103200 Carya illinoinensis HOM05D001776 ORTHO05D001771 8.3e-13 77.0 91 47.3
MBI13_g34294_MAGBIO Magnolia biondii HOM05D001776 ORTHO05D001771 8.3e-13 77.0 109 43.1
Actinidia38521 Actinidia chinensis HOM05D001776 ORTHO05D001771 1.1e-12 76.6 104 42.3
Aqoxy7G02693 Aquilegia oxysepala HOM05D001776 ORTHO05D001771 1.4e-12 76.3 98 44.9
CSS0027028 Camellia sinensis var. sinensis HOM05D001776 ORTHO05D001771 1.4e-12 76.3 102 47.1
CsaV3_2G009010 Cucumis sativus L. HOM05D001776 ORTHO05D001771 1.8e-12 75.9 90 44.4
Cc00_g00460 Coffea canephora HOM05D001776 ORTHO05D001771 2.4e-12 75.5 100 44.0
EL10Ac2g03640 Beta vulgaris HOM05D001776 ORTHO05D001771 4.1e-12 74.7 102 43.1
Potri.018G145500 Populus trichocarpa HOM05D001776 ORTHO05D001771 4.1e-12 74.7 96 49.0
Potri.018G146700 Populus trichocarpa HOM05D001776 ORTHO05D001771 4.1e-12 74.7 101 47.5
COL.COLO4_33454 Corchorus olitorius HOM05D001776 ORTHO05D001771 5.4e-12 74.3 81 53.1
Medtr3g037400 Medicago truncatula HOM05D008161 ORTHO05D001771 5.4e-12 74.3 92 53.3
AUR62028014 Chenopodium quinoa HOM05D001776 ORTHO05D001771 7.0e-12 73.9 101 41.6
TWI34G1874 Tripterygium wilfordii HOM05D001776 ORTHO05D001771 7.0e-12 73.9 112 42.0
MSTRG.10463 Avicennia marina HOM05D001776 ORTHO05D001771 9.2e-12 73.6 98 39.8
ClCG11G011500 Citrullus lanatus HOM05D001776 ORTHO05D001771 1.2e-11 73.2 88 45.5
SGA_v2.0_scaffold21G09625 Striga asiatica HOM05D001776 ORTHO05D001771 1.6e-11 72.8 98 44.9
MD16G1239500 Malus domestica HOM05D001776 ORTHO05D001771 2.0e-11 72.4 109 41.3
Prupe.1G065600 Prunus persica HOM05D001776 ORTHO05D001771 2.0e-11 72.4 106 43.4
unitig_899.g15185 Utricularia gibba HOM05D005244 ORTHO05D006539 2.0e-11 72.4 80 48.8
AUR62020710 Chenopodium quinoa HOM05D001776 ORTHO05D001771 2.7e-11 72.0 101 40.6
AL7G44140 Arabidopsis lyrata HOM05D001776 ORTHO05D001771 3.5e-11 71.6 90 44.4
Sc23g0004330 Simmondsia chinensis HOM05D001776 ORTHO05D001771 3.5e-11 71.6 93 43.0
vmacro22291 Vaccinium macrocarpon HOM05D001776 ORTHO05D001771 3.5e-11 71.6 104 44.2
Ah.11g044270 Amaranthus hybridus HOM05D001776 ORTHO05D001771 4.5e-11 71.2 96 45.8
Hund19364 Selenicereus undatus HOM05D001776 ORTHO05D001771 4.5e-11 71.2 106 37.7
TAR626G1512 Trochodendron aralioides HOM05D001776 ORTHO05D001771 4.5e-11 71.2 65 52.3
vmacro20780 Vaccinium macrocarpon HOM05D001776 ORTHO05D001771 4.5e-11 71.2 92 44.6
THA.LOC104815317 Tarenaya hassleriana HOM05D001776 ORTHO05D001771 5.9e-11 70.9 100 44.0
TAR383G0816 Trochodendron aralioides HOM05D001776 ORTHO05D001771 5.9e-11 70.9 97 39.2
Peaxi162Scf00320g00413 Petunia axillaris HOM05D001776 ORTHO05D001771 1.0e-10 70.1 93 44.1
ECA234G3906 Erigeron canadensis HOM05D001776 ORTHO05D001771 1.7e-10 69.3 91 45.1
MSTRG.26521 Avicennia marina HOM05D001776 ORTHO05D001771 2.3e-10 68.9 69 50.7
CAN.G106.15 Capsicum annuum HOM05D001776 ORTHO05D001771 3.8e-10 68.2 99 41.4
Lsat_1_v5_gn_5_82421 Lactuca sativa HOM05D001776 ORTHO05D001771 3.8e-10 68.2 38 78.9
Nitab4.5_0004188g0070 Nicotiana tabacum HOM05D001776 ORTHO05D001771 3.8e-10 68.2 93 44.1
Potri.006G077600 Populus trichocarpa HOM05D001776 ORTHO05D001771 6.6e-10 67.4 86 54.7
THA.LOC104808910 Tarenaya hassleriana HOM05D001776 ORTHO05D001771 6.6e-10 67.4 84 40.5
BcaC07g37670 Brassica carinata HOM05D001776 ORTHO05D001771 8.6e-10 67.0 68 51.5
A08p09650 Brassica napus HOM05D001776 ORTHO05D001771 8.6e-10 67.0 68 51.5
BolC8t48040H Brassica oleracea HOM05D001776 ORTHO05D001771 8.6e-10 67.0 68 51.5
BraA08t32962Z Brassica rapa HOM05D001776 ORTHO05D001771 8.6e-10 67.0 68 51.5
BcaB04g18054 Brassica carinata HOM05D001776 ORTHO05D001771 1.1e-09 66.6 68 51.5
Rhsim03G0268500 Rhododendron simsii HOM05D001776 ORTHO05D001771 1.5e-09 66.2 73 47.9
PGSC0003DMG400013699 Solanum tuberosum HOM05D001776 ORTHO05D001771 1.5e-09 66.2 93 41.9
AT5G35330 Arabidopsis thaliana HOM05D001776 ORTHO05D001771 1.9e-09 65.9 92 40.2
CDE04G2318 Ceratophyllum demersum HOM05D001776 ORTHO05D001771 2.5e-09 65.5 64 51.6
Os09g0494300 Oryza sativa ssp. japonica HOM05D001776 ORTHO05D001771 2.5e-09 65.5 63 44.4
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 4.3e-09 64.7 53 56.6
Nitab4.5_0001205g0020 Nicotiana tabacum HOM05D001776 ORTHO05D001771 5.6e-09 64.3 76 48.7
SalBow6G0354 Salvia bowleyana HOM05D001776 ORTHO05D001771 5.6e-09 64.3 32 84.4
Sed0013888 Sechium edule HOM05D001776 ORTHO05D001771 5.6e-09 64.3 95 42.1
SGA_v2.0_scaffold693G53460 Striga asiatica HOM05D001776 ORTHO05D001771 5.6e-09 64.3 101 37.6
Sopen05g027760 Solanum pennellii HOM05D000002 ORTHO05D000001 7.3e-09 63.9 93 40.9
CARHR217370 Cardamine hirsuta HOM05D001776 ORTHO05D001771 9.5e-09 63.5 78 46.2
Migut.B00848 Erythranthe guttata HOM05D001776 ORTHO05D001771 9.5e-09 63.5 90 40.0
Nitab4.5_0005411g0070 Nicotiana tabacum HOM05D001776 ORTHO05D001771 9.5e-09 63.5 34 76.5
Nitab4.5_0000413g0060 Nicotiana tabacum HOM05D001776 ORTHO05D001771 1.2e-08 63.2 73 49.3
Sabra06G0058700 Salix brachista HOM05D001776 ORTHO05D001771 1.2e-08 63.2 31 90.3
HanXRQChr09g0245901 Helianthus annuus HOM05D001776 ORTHO05D001771 2.1e-08 62.4 98 40.8
PSO478G1737 Papaver somniferum HOM05D001776 ORTHO05D001771 2.1e-08 62.4 100 40.0
HPP92_010798 Vanilla planifolia HOM05D001776 ORTHO05D001771 2.1e-08 62.4 93 35.5
Thhalv10003457m.g Eutrema salsugineum HOM05D001776 ORTHO05D001771 2.8e-08 62.0 60 53.3
PSO017G4274 Papaver somniferum HOM05D001776 ORTHO05D001771 2.8e-08 62.0 100 40.0
TPR.G21362 Trifolium pratense HOM05D001776 ORTHO05D001771 2.8e-08 62.0 40 77.5
Oeu057461.1 Olea europaea HOM05D001776 ORTHO05D001771 3.6e-08 61.6 88 42.0
SEGI_01377 Sequoiadendron giganteum HOM05D001776 ORTHO05D001771 6.1e-08 60.8 73 45.2
HanXRQChr12g0359211 Helianthus annuus HOM05D001776 ORTHO05D001771 8.0e-08 60.5 68 51.5
Zm00001eb102090 Zea mays HOM05D001776 ORTHO05D001771 8.0e-08 60.5 102 38.2
Zm00001eb120500 Zea mays HOM05D001776 ORTHO05D001771 8.0e-08 60.5 98 34.7
HanXRQChr03g0067341 Helianthus annuus HOM05D001776 ORTHO05D001771 1.0e-07 60.1 108 37.0
ECA240G0360 Erigeron canadensis HOM05D001776 ORTHO05D001771 1.8e-07 59.3 102 36.3
CDE07G1244 Ceratophyllum demersum HOM05D002718 ORTHO05D003027 2.3e-07 58.9 35 71.4
SGA_v2.0_scaffold31G12721 Striga asiatica HOM05D001776 ORTHO05D001771 2.3e-07 58.9 33 72.7
Carub.0007s3115 Capsella rubella HOM05D001776 ORTHO05D001771 4.0e-07 58.2 92 38.0
Nn2g12782 Nelumbo nucifera HOM05D001776 ORTHO05D001771 5.2e-07 57.8 34 67.6
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 3.4e-06 55.1 63 44.4
Oeu000375.3 Olea europaea HOM05D001776 ORTHO05D001771 9.8e-06 53.5 37 64.9


User provided reference genes

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