Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 5.5e-166 587.8 349 100.0
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 1.1e-145 520.4 355 85.1
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 6.5e-135 484.6 354 82.5
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 1.9e-134 483.0 353 80.2
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 4.2e-134 481.9 353 84.7
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 5.2e-124 448.4 354 78.2
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 1.6e-120 436.8 359 72.7
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 2.7e-120 436.0 347 77.2
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 5.0e-119 431.8 354 70.6
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 5.6e-118 428.3 361 73.1
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 9.5e-118 427.6 354 76.0
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 3.0e-116 422.5 359 77.4
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 2.6e-115 419.5 342 75.1
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 9.8e-115 417.5 369 68.8
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 1.7e-114 416.8 357 75.1
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 3.7e-114 415.6 335 78.5
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.6e-109 400.2 358 67.3
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 2.8e-109 399.4 357 68.6
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.8e-108 396.7 356 66.9
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 4.0e-108 395.6 354 64.7
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 8.9e-108 394.4 354 65.8
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 2.6e-107 392.9 366 67.8
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 4.9e-106 388.7 356 68.3
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 1.1e-105 387.5 358 68.2
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 4.1e-105 385.6 358 67.3
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 6.0e-104 381.7 357 71.7
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 3.9e-103 379.0 400 57.5
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 5.0e-103 378.6 351 66.4
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 5.0e-103 378.6 361 62.3
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 8.6e-103 377.9 302 73.8
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 1.1e-102 377.5 359 67.4
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.9e-102 376.7 355 67.6
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 5.6e-102 375.2 342 69.9
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 9.5e-102 374.4 355 67.9
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 9.5e-102 374.4 358 65.1
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 2.1e-101 373.2 358 64.5
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 3.6e-101 372.5 355 65.1
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 4.7e-101 372.1 368 63.6
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 6.2e-101 371.7 359 64.9
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 2.3e-100 369.8 359 64.1
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 5.2e-100 368.6 340 67.4
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 7.5e-99 364.8 354 66.1
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 1.7e-98 363.6 356 62.9
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 2.2e-98 363.2 355 66.2
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 2.9e-98 362.8 356 66.0
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 1.1e-97 360.9 356 65.7
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 1.4e-97 360.5 358 65.6
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 3.2e-97 359.4 356 65.4
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 1.3e-95 354.0 360 61.9
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 3.0e-95 352.8 355 61.4
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 1.1e-94 350.9 250 78.4
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 1.9e-94 350.1 347 65.1
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 3.3e-94 349.4 355 65.6
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 3.6e-93 345.9 250 74.0
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 6.2e-93 345.1 354 63.6
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 1.1e-92 344.4 360 62.8
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.1e-92 344.4 360 62.8
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.1e-92 342.8 379 57.3
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.0e-91 340.1 311 65.0
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 4.4e-91 339.0 342 61.1
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.9e-90 336.3 345 64.9
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 2.9e-90 336.3 366 62.6
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 3.8e-90 335.9 330 65.5
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 4.9e-90 335.5 264 70.8
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.1e-89 334.3 361 61.5
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.9e-89 333.6 342 62.6
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 5.4e-89 332.0 343 63.8
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 2.1e-88 330.1 367 58.0
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.1e-88 330.1 232 75.4
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 3.5e-88 329.3 363 64.5
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.7e-87 327.0 343 63.3
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 3.0e-87 326.2 336 63.4
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 5.1e-87 325.5 355 63.9
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 1.9e-86 323.6 387 58.1
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 1.8e-84 317.0 379 53.6
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 5.2e-84 315.5 333 61.9
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 5.8e-83 312.0 371 62.0
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 4.9e-82 308.9 375 54.4
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 8.4e-82 308.1 369 57.2
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 1.9e-81 307.0 362 57.2
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 7.1e-81 305.1 228 72.8
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 2.7e-80 303.1 351 56.7
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 5.6e-78 295.4 356 57.0
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 1.3e-77 294.3 356 57.0
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 1.6e-77 293.9 346 58.4
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 6.2e-77 292.0 297 63.0
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 8.1e-77 291.6 367 57.8
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 2.0e-75 287.0 365 55.6
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 4.5e-75 285.8 254 65.4
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 4.5e-75 285.8 365 55.3
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 9.9e-75 284.6 360 53.9
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.7e-74 283.9 513 42.3
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 6.4e-74 282.0 170 88.2
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 5.4e-73 278.9 364 56.0
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 5.4e-73 278.9 364 55.8
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 6.0e-72 275.4 258 62.8
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 3.0e-71 273.1 363 57.0
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.3e-69 267.7 215 65.6
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 1.3e-66 257.7 363 54.3
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 1.7e-66 257.3 370 47.8
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 3.8e-66 256.1 248 60.9
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 6.4e-66 255.4 381 48.0
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 8.4e-66 255.0 372 47.6
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 3.2e-65 253.1 363 54.3
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 3.5e-64 249.6 348 48.6
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 4.6e-64 249.2 369 47.2
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 1.9e-62 243.8 210 70.5
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 3.3e-62 243.0 387 45.7
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 3.3e-62 243.0 387 45.7
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 9.6e-62 241.5 224 59.4
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 3.1e-60 236.5 335 51.6
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 3.9e-55 219.5 334 51.5
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 5.1e-55 219.2 217 52.1
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 9.7e-54 214.9 346 46.8
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 1.3e-53 214.5 160 73.1
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 6.5e-50 202.2 264 48.5
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.3e-47 194.5 196 62.8
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 1.8e-44 184.1 369 40.1
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 5.0e-42 176.0 393 43.5
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 1.1e-38 164.9 336 41.7
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 3.1e-36 156.8 326 37.7
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 2.8e-29 133.7 122 58.2
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 7.7e-27 125.6 211 48.3
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 1.7e-26 124.4 211 49.3
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 3.8e-26 123.2 211 48.8
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 6.5e-26 122.5 388 33.0
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 9.4e-25 118.6 74 79.7
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 2.6e-22 110.5 252 36.9
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 2.7e-11 73.9 49 67.3
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 2.7e-11 73.9 89 48.3
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 2.7e-11 73.9 89 48.3
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 9.5e-09 65.5 164 33.5
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 3.6e-08 63.5 255 26.7
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 1.0e-07 62.0 103 40.8
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 5.2e-07 59.7 90 44.4


User provided reference genes

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