Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 2.0e-131 472.6 272 100.0
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 6.5e-98 361.3 280 79.6
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 4.7e-96 355.1 287 70.7
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 8.5e-90 334.3 274 69.3
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 4.8e-85 318.5 275 64.7
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 8.2e-85 317.8 272 65.4
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 5.3e-84 315.1 284 71.8
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 4.8e-77 292.0 263 64.6
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 2.8e-69 266.2 275 58.2
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 7.0e-68 261.5 271 55.0
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 2.7e-67 259.6 272 53.3
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 2.9e-66 256.1 267 51.7
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 3.8e-66 255.8 272 54.4
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 5.0e-66 255.4 270 51.5
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 7.3e-65 251.5 273 52.0
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.2e-64 250.8 273 52.4
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 4.7e-64 248.8 278 50.0
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 6.1e-64 248.4 279 52.7
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 8.0e-64 248.1 297 49.8
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 1.8e-63 246.9 271 51.3
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 1.8e-63 246.9 281 50.2
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 3.0e-63 246.1 271 53.1
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 4.0e-63 245.7 272 51.8
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 3.7e-61 239.2 275 49.8
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 4.9e-61 238.8 271 50.2
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 6.4e-61 238.4 276 49.6
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 4.1e-60 235.7 284 50.4
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.2e-59 234.2 268 49.3
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 3.5e-59 232.6 269 50.2
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 7.8e-59 231.5 283 50.2
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 3.0e-58 229.6 276 55.8
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 3.9e-58 229.2 274 49.6
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 5.0e-58 228.8 275 49.5
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 6.6e-58 228.4 274 48.9
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 1.5e-57 227.3 276 53.6
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 1.5e-57 227.3 265 47.5
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 4.3e-57 225.7 266 49.6
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 5.6e-57 225.3 268 47.8
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.6e-56 223.8 204 55.9
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 2.1e-56 223.4 273 48.4
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 2.8e-56 223.0 281 46.6
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 4.7e-56 222.2 280 45.0
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 1.0e-55 221.1 288 45.8
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 1.0e-55 221.1 280 44.6
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 1.4e-55 220.7 276 46.4
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 1.8e-55 220.3 274 46.7
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 5.2e-55 218.8 279 46.2
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 1.2e-54 217.6 283 47.3
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 2.0e-54 216.9 265 46.4
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 4.4e-54 215.7 283 44.2
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 7.5e-54 214.9 276 46.0
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 1.3e-53 214.2 280 43.9
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.7e-53 213.8 209 52.6
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 2.2e-53 213.4 286 45.1
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 8.3e-53 211.5 269 46.5
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 3.2e-52 209.5 271 45.8
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 5.4e-52 208.8 271 46.1
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 7.0e-52 208.4 271 45.8
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 5.0e-50 202.2 271 43.5
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 6.6e-50 201.8 280 43.6
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 1.5e-49 200.7 204 51.0
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 1.9e-49 200.3 214 50.5
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.5e-49 199.9 187 52.9
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 4.7e-48 195.7 265 44.5
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 1.4e-47 194.1 268 43.7
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 2.3e-47 193.4 235 49.8
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 5.2e-47 192.2 269 44.2
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 6.8e-47 191.8 255 45.9
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 2.0e-46 190.3 265 44.9
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 1.3e-45 187.6 268 40.3
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 1.7e-45 187.2 238 46.6
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 1.4e-44 184.1 267 39.7
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 4.1e-44 182.6 134 69.4
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 4.1e-44 182.6 262 43.1
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 1.2e-43 181.0 267 40.4
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 6.0e-43 178.7 270 38.9
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 1.0e-42 177.9 271 41.0
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 1.3e-42 177.6 269 40.9
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 3.0e-42 176.4 274 38.7
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 3.0e-42 176.4 277 42.2
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 6.6e-42 175.3 138 82.6
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 1.1e-41 174.5 196 46.4
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 7.3e-41 171.8 270 41.1
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 9.5e-41 171.4 273 38.5
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 4.7e-40 169.1 271 38.0
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 3.1e-39 166.4 271 38.4
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 1.2e-38 164.5 203 44.3
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 1.5e-38 164.1 281 38.4
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 2.0e-38 163.7 203 44.3
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 3.4e-38 162.9 250 40.8
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 5.8e-38 162.2 197 43.7
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.8e-37 159.5 187 46.0
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 1.9e-36 157.1 271 35.8
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 2.4e-36 156.8 235 40.4
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 2.4e-36 156.8 270 40.4
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 1.6e-35 154.1 270 38.1
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 1.0e-34 151.4 255 37.6
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 1.0e-34 151.4 279 38.0
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 2.3e-34 150.2 269 34.6
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.9e-33 147.1 266 35.7
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 2.8e-32 143.3 281 33.5
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 3.6e-32 142.9 136 49.3
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 1.8e-31 140.6 229 41.9
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 2.6e-30 136.7 252 38.1
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 6.4e-29 132.1 271 34.3
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.1e-27 127.1 293 35.5
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 6.6e-26 122.1 233 36.1
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 3.3e-25 119.8 188 37.2
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 4.8e-24 115.9 82 64.6
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 1.1e-23 114.8 85 61.2
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 1.2e-22 111.3 81 67.9
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 1.9e-20 104.0 79 58.2
Ca_28014_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 2.4e-20 103.6 63 90.5
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 9.3e-20 101.7 168 37.5
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 4.6e-19 99.4 277 30.0
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 3.0e-18 96.7 218 32.6
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 7.4e-17 92.0 93 47.3
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 5.3e-15 85.9 233 28.3
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 6.9e-15 85.5 272 27.6
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 1.3e-13 81.3 193 35.2
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 9.3e-12 75.1 94 39.4
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 1.2e-06 58.2 37 70.3
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 5.8e-06 55.8 43 58.1
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 7.6e-06 55.5 37 64.9
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 7.6e-06 55.5 37 64.9


User provided reference genes

Program Settings