Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 0.0e+00 1834.3 929 100.0
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 4.5e-292 1008.1 1051 57.1
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 6.1e-289 997.7 1053 56.7
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 3.2e-282 975.3 1041 57.3
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 7.2e-274 947.6 1074 54.1
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 7.2e-274 947.6 1019 55.7
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 4.6e-268 928.3 1049 53.7
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 6.0e-260 901.4 996 54.8
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 6.8e-240 834.7 1001 51.9
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 1.0e-219 767.7 1062 47.0
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 5.6e-218 761.9 1064 47.4
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 5.9e-167 592.4 905 45.3
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 3.2e-136 490.3 782 45.5
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 1.8e-123 448.0 1077 35.1
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 4.0e-123 446.8 1050 34.2
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 2.9e-121 440.7 1114 34.4
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 1.2e-119 435.3 765 42.4
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.0e-118 432.2 1104 33.2
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 2.3e-118 431.0 1106 32.7
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 4.8e-116 423.3 1069 33.1
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 8.4e-113 412.5 1082 32.7
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 5.4e-112 409.8 1061 32.8
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 2.1e-111 407.9 1105 32.8
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 1.8e-110 404.8 1033 33.6
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 1.8e-110 404.8 1098 32.5
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.8e-110 404.8 1097 32.5
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 3.9e-110 403.7 701 42.2
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 5.1e-110 403.3 1096 33.6
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.9e-109 401.4 1086 32.2
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 5.6e-109 399.8 1071 34.3
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 6.2e-108 396.4 759 41.0
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 2.4e-107 394.4 1050 33.1
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 7.6e-106 389.4 1005 32.7
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.1e-103 381.3 1155 31.1
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 2.7e-103 380.9 999 33.1
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 4.6e-103 380.2 1085 31.3
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 7.9e-103 379.4 1071 31.1
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 7.9e-103 379.4 1084 31.3
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.5e-101 375.2 764 41.2
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.3e-101 373.6 1072 31.3
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 7.4e-101 372.9 1085 31.1
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 7.4e-101 372.9 1152 30.8
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 2.1e-100 371.3 1088 31.2
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 4.0e-99 367.1 1083 31.4
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 1.0e-97 362.5 1016 30.6
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.1e-96 359.0 1091 31.5
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.9e-93 348.2 1109 30.0
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 4.3e-93 347.1 777 37.5
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 6.3e-92 343.2 1031 31.1
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.4e-91 341.3 1021 31.1
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 2.6e-90 337.8 1108 30.4
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 7.2e-88 329.7 1076 30.3
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 3.8e-81 307.4 1039 32.0
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 6.5e-81 306.6 1019 31.0
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 5.5e-80 303.5 765 36.7
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 9.4e-80 302.8 1085 30.3
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 1.5e-77 295.4 1087 30.5
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 4.8e-76 290.4 1100 28.0
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 5.9e-74 283.5 1011 29.3
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 2.2e-73 281.6 1039 29.4
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 8.5e-73 279.6 1080 29.2
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.9e-72 278.5 939 30.9
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 7.2e-72 276.6 966 30.0
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.2e-71 275.8 871 30.4
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.2e-71 275.8 1157 27.5
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 1.2e-71 275.8 1019 28.9
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 1.0e-70 272.7 1046 28.0
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.8e-70 271.9 1005 29.4
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 3.0e-70 271.2 1008 29.3
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 3.9e-70 270.8 1008 29.3
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 3.9e-70 270.8 955 30.6
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.0e-69 268.5 1030 27.9
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 7.4e-69 266.5 1166 27.1
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.1e-67 261.2 866 28.9
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 1.2e-66 259.2 1066 28.0
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.2e-66 259.2 1185 27.1
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.0e-65 256.1 1028 28.3
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 8.5e-65 253.1 938 30.5
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.1e-64 252.7 1071 27.4
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.0e-62 246.1 1046 27.9
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.8e-62 245.4 648 33.6
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 1.8e-62 245.4 1083 26.8
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 1.5e-61 242.3 956 28.8
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 9.7e-61 239.6 1090 27.7
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.2e-58 232.6 939 28.2
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 5.9e-58 230.3 761 30.1
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 1.5e-56 225.7 1153 25.5
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 1.5e-56 225.7 1060 27.1
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 3.0e-54 218.0 723 31.0
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 3.0e-54 218.0 724 31.2
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 3.0e-54 218.0 724 31.2
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 9.8e-53 213.0 1036 26.4
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 4.8e-52 210.7 304 49.7
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 3.1e-51 208.0 709 28.2
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 3.1e-51 208.0 727 32.5
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 9.1e-51 206.5 403 36.2
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.2e-50 206.1 524 37.6
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 2.0e-50 205.3 765 28.5
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 5.9e-50 203.8 706 30.0
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 1.3e-49 202.6 527 31.9
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.9e-48 198.7 609 32.2
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 2.5e-48 198.4 675 30.1
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 9.5e-48 196.4 728 30.4
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 2.1e-47 195.3 728 30.4
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.4e-46 192.6 428 33.9
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 2.6e-45 188.3 775 26.3
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.3e-41 176.0 926 27.0
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 6.6e-41 173.7 196 47.4
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.4e-37 161.0 257 38.9
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 4.9e-36 157.5 384 32.3
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.5e-34 151.4 432 30.6
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 7.8e-34 150.2 648 28.5
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.9e-33 147.9 421 29.9
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.1e-31 142.1 880 26.5
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 2.3e-30 138.7 736 23.9
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 5.2e-30 137.5 594 25.8
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 2.6e-29 135.2 664 23.9
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 4.4e-29 134.4 732 23.8
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.4e-27 128.6 160 42.5
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 3.2e-27 128.3 135 48.1
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 1.0e-25 123.2 464 31.9
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 5.0e-25 120.9 154 39.0
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 6.6e-25 120.6 176 36.9
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.6e-23 115.9 137 40.1
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 4.7e-23 114.4 163 45.4
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 1.4e-22 112.8 391 26.9
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 6.8e-22 110.5 167 40.7
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 4.4e-21 107.8 102 50.0
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 9.9e-21 106.7 140 42.9
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.7e-20 105.9 131 43.5
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 2.2e-20 105.5 80 65.0
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 3.2e-19 101.7 1104 21.1
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 4.1e-19 101.3 113 46.9
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.1e-16 93.2 469 24.7
Glyma.20G205250 Glycine max HOM05D005259 ORTHO05D006402 2.5e-16 92.0 171 39.2
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 1.8e-14 85.9 951 23.4
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 4.0e-14 84.7 235 30.6
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 9.9e-13 80.1 102 38.2
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 3.8e-12 78.2 162 30.9
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 3.2e-11 75.1 412 28.2
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 4.1e-11 74.7 102 37.3
Glyma.20G205301 Glycine max HOM05D005259 ORTHO05D006402 9.2e-11 73.6 167 37.1
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 7.3e-08 63.9 61 49.2


User provided reference genes

Program Settings