Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.8e-91 337.0 161 100.0
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 2.1e-67 259.2 180 72.2
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 6.0e-67 257.7 161 77.0
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.3e-66 256.5 161 77.6
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 5.1e-66 254.6 167 73.1
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.1e-64 249.2 161 73.9
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 9.9e-62 240.4 182 66.5
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 9.9e-62 240.4 182 66.5
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.7e-61 239.6 169 71.0
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 3.8e-61 238.4 164 73.2
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 3.8e-61 238.4 144 77.1
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.1e-60 236.9 157 70.7
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.9e-60 236.1 180 65.0
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 3.5e-59 231.9 155 71.0
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 6.0e-59 231.1 157 69.4
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.0e-58 230.3 158 69.0
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.3e-58 229.9 134 79.1
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 8.7e-58 227.3 182 62.1
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 3.3e-57 225.3 130 79.2
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 4.3e-57 224.9 167 66.5
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 6.2e-56 221.1 119 82.4
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 8.1e-56 220.7 168 63.7
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.1e-56 220.7 168 63.7
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 8.1e-56 220.7 169 65.7
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 2.4e-55 219.2 156 66.0
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.4e-55 219.2 173 61.8
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.0e-54 216.1 168 62.5
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 2.0e-54 216.1 179 59.2
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 2.6e-54 215.7 168 61.3
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.6e-54 215.7 168 61.3
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 7.6e-54 214.2 195 55.4
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.3e-53 213.4 195 55.9
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 1.3e-53 213.4 174 62.1
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 1.7e-53 213.0 174 61.5
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.7e-53 213.0 181 57.5
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.9e-53 212.2 174 60.9
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 2.9e-53 212.2 181 57.5
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 3.8e-53 211.8 175 59.4
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 6.4e-53 211.1 170 58.8
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.9e-52 209.5 166 60.2
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.2e-52 208.8 171 60.8
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 4.2e-52 208.4 178 57.9
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 5.4e-52 208.0 122 76.2
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 5.4e-52 208.0 179 57.5
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 5.4e-52 208.0 180 57.2
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.2e-51 206.8 174 60.3
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.1e-51 206.1 172 57.6
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 2.1e-51 206.1 178 56.7
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.5e-51 205.3 173 55.5
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.5e-51 205.3 176 58.0
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 6.0e-51 204.5 185 52.4
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.0e-50 203.8 132 67.4
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.0e-50 203.8 177 56.5
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.8e-50 203.0 175 56.6
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.3e-50 202.6 168 57.7
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 6.7e-50 201.1 120 72.5
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 8.7e-50 200.7 118 72.9
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 8.7e-50 200.7 181 56.4
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 3.3e-49 198.7 124 69.4
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.3e-49 198.4 175 56.6
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 7.4e-49 197.6 202 52.5
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 7.4e-49 197.6 112 78.6
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 9.6e-49 197.2 173 56.6
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.6e-49 197.2 118 73.7
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.3e-48 196.8 143 63.6
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 2.1e-48 196.1 202 51.5
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 2.1e-48 196.1 125 68.0
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.1e-48 196.1 175 53.1
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 4.8e-48 194.9 168 58.9
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.8e-47 193.0 120 71.7
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.1e-47 192.2 149 60.4
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 6.9e-47 191.0 143 60.8
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.2e-46 190.3 166 57.8
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 2.6e-46 189.1 172 55.2
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 3.4e-46 188.7 123 68.3
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 3.4e-46 188.7 123 68.3
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 3.4e-46 188.7 123 68.3
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 3.4e-46 188.7 123 68.3
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.4e-46 188.7 118 67.8
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 7.6e-46 187.6 123 68.3
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 7.6e-46 187.6 123 68.3
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 7.6e-46 187.6 125 66.4
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 9.9e-46 187.2 116 69.8
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 1.3e-45 186.8 143 61.5
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.7e-45 186.4 171 52.6
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.2e-45 186.0 124 65.3
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 2.2e-45 186.0 156 55.8
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 8.4e-45 184.1 119 64.7
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 1.4e-44 183.3 119 64.7
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.9e-44 183.0 172 55.8
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.9e-44 183.0 172 55.8
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 2.4e-44 182.6 120 66.7
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 2.4e-44 182.6 140 60.0
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 4.2e-44 181.8 124 67.7
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 5.5e-44 181.4 140 59.3
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 7.1e-44 181.0 174 50.6
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.1e-44 181.0 175 50.3
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 9.3e-44 180.6 120 67.5
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 9.3e-44 180.6 158 55.7
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.6e-43 179.9 126 64.3
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.1e-43 179.5 118 69.5
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 2.7e-43 179.1 148 57.4
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.5e-43 178.7 171 50.9
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 3.5e-43 178.7 126 63.5
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.5e-43 178.7 175 49.1
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.8e-42 176.4 120 65.0
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.8e-42 176.4 120 65.0
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.8e-42 176.4 120 65.0
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.3e-42 176.0 175 49.1
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 5.1e-42 174.9 171 52.0
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.7e-42 174.1 133 57.9
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 1.1e-41 173.7 135 56.3
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-41 173.7 118 63.6
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.1e-41 173.7 164 53.0
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.4e-41 171.0 117 63.2
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 9.6e-41 170.6 125 59.2
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 2.8e-40 169.1 165 52.1
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.8e-40 169.1 169 50.3
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.8e-40 169.1 118 61.9
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 3.7e-40 168.7 128 55.5
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 1.4e-39 166.8 122 59.0
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.8e-39 166.4 118 58.5
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 3.1e-39 165.6 122 59.8
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 3.1e-39 165.6 123 58.5
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 3.1e-39 165.6 131 55.7
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 4.0e-39 165.2 136 55.1
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.0e-39 165.2 140 57.1
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 5.3e-39 164.9 121 61.2
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 9.0e-39 164.1 114 59.6
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.2e-38 163.7 122 57.4
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 2.0e-38 162.9 129 56.6
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 2.0e-38 162.9 159 49.7
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 6.5e-37 157.9 124 58.1
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 4.2e-36 155.2 118 56.8
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.9e-35 151.0 113 56.6
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.8e-34 149.8 123 50.4
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 5.1e-34 148.3 137 49.6
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 6.7e-34 147.9 132 52.3
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 8.7e-34 147.5 120 50.8
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.5e-33 146.0 122 54.9
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.3e-32 143.7 93 64.5
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.8e-32 142.5 102 57.8
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 8.2e-32 141.0 112 54.5
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.6e-30 136.0 156 48.7
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 7.6e-30 134.4 98 59.2
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.4e-28 130.2 120 50.8
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.9e-28 129.8 109 56.9
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 2.5e-28 129.4 112 50.9
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 5.5e-28 128.3 109 59.6
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.2e-28 127.9 93 60.2
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.2e-27 127.1 114 50.0
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-27 126.7 88 60.2
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.1e-27 126.3 96 59.4
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 7.9e-27 124.4 111 52.3
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 4.3e-25 118.6 128 44.5
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 4.8e-24 115.2 147 43.5
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 6.9e-23 111.3 119 44.5
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.0e-21 107.5 107 47.7
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.7e-21 106.7 118 44.9
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.7e-21 106.7 118 44.9
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.2e-21 106.3 110 46.4
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.9e-21 105.9 75 62.7
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 8.5e-21 104.4 121 40.5
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 9.4e-20 100.9 109 52.3
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.2e-19 100.5 127 40.2
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.1e-19 99.8 72 56.9
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 1.8e-15 86.7 125 40.8
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 9.1e-15 84.3 100 39.0
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.4e-10 70.5 114 40.4
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 3.9e-10 68.9 75 42.7
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 7.4e-09 64.7 56 53.6
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.3e-08 63.9 42 59.5


User provided reference genes

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