Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.5e-146 521.5 252 100.0
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.7e-135 484.6 233 100.0
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.7e-76 290.0 192 73.4
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 3.2e-75 285.8 195 70.8
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 2.4e-70 269.6 192 66.7
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 3.6e-66 255.8 183 68.9
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.1e-64 250.8 182 66.5
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 4.4e-64 248.8 182 63.7
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 6.3e-63 245.0 182 63.2
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.1e-62 244.2 182 66.5
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 2.9e-60 236.1 181 64.1
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 6.5e-60 235.0 181 61.9
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.6e-58 230.3 182 63.7
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 3.6e-58 229.2 181 61.9
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 3.6e-58 229.2 186 59.1
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.0e-57 227.6 179 61.5
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.0e-57 227.6 182 61.5
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.8e-57 226.9 180 62.2
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 4.4e-56 222.2 183 59.6
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 8.2e-55 218.0 141 70.2
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 1.8e-54 216.9 119 77.3
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.4e-54 216.5 177 61.6
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 4.5e-53 212.2 182 57.1
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 5.9e-53 211.8 195 54.4
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 5.9e-53 211.8 195 54.4
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 1.0e-52 211.1 177 55.4
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 6.5e-52 208.4 194 49.5
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 8.5e-52 208.0 203 49.8
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.5e-51 207.2 179 52.0
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 2.5e-51 206.5 179 51.4
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 7.2e-51 204.9 179 54.2
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.6e-50 203.8 177 51.4
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 2.1e-50 203.4 131 67.2
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.1e-50 203.4 131 67.2
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.7e-50 203.0 177 53.7
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 3.6e-50 202.6 176 52.3
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 6.1e-50 201.8 177 53.7
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 6.1e-50 201.8 177 53.1
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.0e-49 201.1 181 54.7
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-49 200.7 125 69.6
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 2.3e-49 199.9 178 54.5
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 3.0e-49 199.5 128 68.8
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 4.0e-49 199.1 131 67.2
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.0e-49 199.1 131 67.2
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.8e-49 198.0 126 68.3
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.2e-48 197.6 124 68.5
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.2e-48 197.6 177 52.5
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.2e-48 197.6 180 55.0
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.5e-48 197.2 175 52.6
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 2.0e-48 196.8 179 52.5
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 2.6e-48 196.4 135 64.4
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 3.4e-48 196.1 174 53.4
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 3.4e-48 196.1 177 50.3
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 3.4e-48 196.1 177 55.9
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.7e-47 193.7 180 51.7
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 8.3e-47 191.4 178 48.9
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 2.4e-46 189.9 125 65.6
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 4.1e-46 189.1 137 63.5
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 4.1e-46 189.1 179 52.5
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 5.3e-46 188.7 132 64.4
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.3e-46 188.7 118 68.6
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 7.0e-46 188.3 135 63.0
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 9.1e-46 188.0 177 50.8
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.2e-45 187.6 132 62.9
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.2e-45 187.6 135 60.0
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 2.0e-45 186.8 125 65.6
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.5e-45 186.0 184 51.1
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 5.9e-45 185.3 127 62.2
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 2.2e-44 183.3 118 66.1
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.9e-44 183.0 138 60.9
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 2.9e-44 183.0 177 50.3
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.9e-44 183.0 139 56.8
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 3.8e-44 182.6 132 62.1
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.8e-44 182.6 112 68.8
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 5.0e-44 182.2 134 60.4
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 5.0e-44 182.2 134 60.4
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 5.0e-44 182.2 134 60.4
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 5.0e-44 182.2 134 60.4
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 5.0e-44 182.2 178 50.6
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 5.0e-44 182.2 178 50.6
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 8.5e-44 181.4 181 49.2
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.1e-43 181.0 124 64.5
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 1.5e-43 180.6 134 60.4
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 1.5e-43 180.6 134 60.4
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.5e-43 180.6 118 69.5
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 4.2e-43 179.1 127 59.1
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 4.2e-43 179.1 178 50.0
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 5.5e-43 178.7 138 58.0
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 7.2e-43 178.3 127 59.1
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 9.4e-43 177.9 129 59.7
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.2e-42 177.6 136 61.8
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 6.1e-42 175.3 177 49.2
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 2.3e-41 173.3 130 56.9
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 3.0e-41 172.9 139 55.4
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 3.0e-41 172.9 125 59.2
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.0e-41 172.6 118 62.7
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 8.8e-41 171.4 140 56.4
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.5e-40 170.6 139 54.7
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.0e-40 170.2 176 44.9
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 2.6e-40 169.9 145 52.4
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 3.4e-40 169.5 188 48.9
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.4e-40 169.1 131 55.0
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 5.7e-40 168.7 138 55.1
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 7.5e-40 168.3 183 47.0
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.3e-39 167.5 123 57.7
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.3e-39 167.5 169 48.5
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 2.2e-39 166.8 138 55.1
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 2.8e-39 166.4 167 50.3
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.8e-39 166.4 122 59.8
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.7e-39 166.0 181 45.9
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.3e-39 165.2 131 56.5
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.1e-38 164.5 138 53.6
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.1e-38 164.5 138 53.6
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.1e-38 164.5 138 53.6
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.8e-38 163.7 120 61.7
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 3.1e-38 162.9 171 48.5
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.6e-37 160.6 139 56.1
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.0e-37 160.2 125 56.8
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 2.7e-37 159.8 120 58.3
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 2.7e-37 159.8 132 50.8
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 3.5e-37 159.5 171 46.2
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.0e-36 157.9 127 52.0
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-36 157.1 118 58.5
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 2.3e-36 156.8 120 59.2
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 5.0e-36 155.6 128 52.3
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.0e-36 155.6 117 59.0
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 5.0e-36 155.6 125 55.2
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 6.6e-36 155.2 116 59.5
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.9e-35 153.7 118 55.9
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 3.3e-35 152.9 126 54.8
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 5.5e-35 152.1 131 50.4
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.2e-35 151.8 118 55.1
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 6.1e-34 148.7 157 54.1
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 8.9e-33 144.8 118 54.2
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 7.5e-32 141.7 125 52.0
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 7.5e-32 141.7 123 48.8
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 1.3e-31 141.0 121 48.8
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 2.4e-30 136.7 120 49.2
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 7.0e-30 135.2 112 52.7
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 9.2e-30 134.8 132 48.5
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-29 134.0 113 52.2
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.0e-29 133.7 92 60.9
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 7.8e-29 131.7 122 50.0
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.7e-28 130.6 109 60.6
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 8.6e-28 128.3 109 54.1
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.9e-27 127.1 102 54.9
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 7.3e-27 125.2 120 47.5
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.6e-26 124.0 112 50.9
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 3.6e-26 122.9 98 56.1
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 5.2e-25 119.0 111 51.4
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 3.4e-24 116.3 150 41.3
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.4e-24 115.9 93 57.0
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.5e-24 115.2 96 57.3
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 9.8e-24 114.8 106 45.3
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 4.9e-23 112.5 128 42.2
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.4e-22 109.0 88 54.5
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.7e-20 104.0 118 43.2
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.7e-20 104.0 118 43.2
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.3e-20 103.6 121 39.7
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 3.9e-20 102.8 124 41.9
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.9e-19 100.5 107 43.9
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.6e-18 97.4 119 44.5
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 2.1e-18 97.1 118 40.7
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.1e-17 93.2 78 56.4
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.4e-16 89.7 76 50.0
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.2e-15 87.0 72 51.4
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 4.9e-15 85.9 126 38.1
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 1.4e-14 84.3 100 38.0
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.9e-11 73.9 114 38.6
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 2.8e-10 70.1 72 43.1
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.3e-09 67.0 42 61.9
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 2.9e-07 60.1 40 65.0


User provided reference genes

Program Settings