Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 2.1e-28 128.3 63 100.0
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 2.6e-26 121.3 63 93.7
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 1.3e-25 119.0 62 90.3
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 1.1e-24 115.9 62 88.7
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 2.5e-24 114.8 63 88.9
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 7.1e-24 113.2 62 85.5
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 1.2e-23 112.5 62 87.1
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 2.1e-23 111.7 62 83.9
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 2.7e-23 111.3 62 83.9
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 2.7e-23 111.3 62 85.5
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 7.9e-23 109.8 62 82.3
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 1.3e-22 109.0 62 83.9
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 1.8e-22 108.6 62 80.6
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 1.8e-22 108.6 62 80.6
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 2.3e-22 108.2 62 79.0
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 3.0e-22 107.8 62 82.3
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 5.1e-22 107.1 62 80.6
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 6.7e-22 106.7 62 79.0
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 8.7e-22 106.3 62 82.3
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 1.1e-21 105.9 62 80.6
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 1.1e-21 105.9 62 80.6
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 1.1e-21 105.9 62 82.3
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 5.7e-21 103.6 62 75.8
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 5.7e-21 103.6 62 75.8
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 7.4e-21 103.2 62 74.2
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 9.6e-21 102.8 62 75.8
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 9.6e-21 102.8 62 74.2
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 2.1e-20 101.7 62 77.4
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 2.1e-20 101.7 62 75.8
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 3.7e-20 100.9 62 75.8
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.7e-20 100.9 62 75.8
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.7e-20 100.9 62 75.8
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 3.7e-20 100.9 62 72.6
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 6.3e-20 100.1 62 74.2
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 6.3e-20 100.1 62 75.8
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 8.2e-20 99.8 63 74.6
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 8.2e-20 99.8 62 79.0
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 8.2e-20 99.8 62 74.2
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.1e-19 99.4 62 74.2
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 1.1e-19 99.4 62 74.2
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 1.1e-19 99.4 63 74.6
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 2.4e-19 98.2 63 71.4
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 6.9e-19 96.7 62 75.8
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 9.0e-19 96.3 62 72.6
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 1.2e-18 95.9 62 75.8
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 1.5e-18 95.5 62 74.2
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 2.0e-18 95.1 63 74.6
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 2.0e-18 95.1 63 71.4
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 2.0e-18 95.1 63 71.4
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 4.5e-18 94.0 63 69.8
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 5.9e-18 93.6 62 72.6
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 5.9e-18 93.6 62 72.6
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 7.6e-18 93.2 62 71.0
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 1.7e-17 92.0 62 69.4
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 2.9e-17 91.3 62 67.7
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 3.8e-17 90.9 62 71.0
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 5.0e-17 90.5 62 69.4
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 6.5e-17 90.1 62 69.4
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 6.5e-17 90.1 63 66.7
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 1.1e-16 89.4 63 71.4
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 1.1e-16 89.4 62 69.4
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 5.5e-16 87.0 62 69.4
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 5.5e-16 87.0 63 68.3
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 7.2e-16 86.7 59 67.8
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 7.2e-16 86.7 62 67.7
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 7.2e-16 86.7 63 63.5
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 7.2e-16 86.7 63 63.5
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 9.3e-16 86.3 62 67.7
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 9.3e-16 86.3 62 64.5
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 9.3e-16 86.3 62 67.7
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 1.2e-15 85.9 62 66.1
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 1.2e-15 85.9 62 66.1
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 1.6e-15 85.5 62 62.9
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 2.1e-15 85.1 63 68.3
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 2.1e-15 85.1 62 64.5
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 2.1e-15 85.1 63 61.9
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 2.7e-15 84.7 62 64.5
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 2.7e-15 84.7 62 64.5
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 2.7e-15 84.7 62 64.5
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 2.7e-15 84.7 65 67.7
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 2.7e-15 84.7 62 64.5
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 3.6e-15 84.3 62 66.1
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 3.6e-15 84.3 62 62.9
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 4.6e-15 84.0 62 66.1
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 4.6e-15 84.0 62 62.9
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 6.1e-15 83.6 62 66.1
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 6.1e-15 83.6 62 64.5
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 1.0e-14 82.8 62 61.3
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 1.0e-14 82.8 62 62.9
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 1.0e-14 82.8 63 61.9
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 2.3e-14 81.6 62 61.3
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 2.3e-14 81.6 62 61.3
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 3.9e-14 80.9 52 71.2
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 6.7e-14 80.1 52 73.1
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 1.9e-13 78.6 64 64.1
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 4.3e-13 77.4 62 53.2
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 1.3e-12 75.9 62 56.5
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 1.6e-12 75.5 47 74.5
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 2.8e-12 74.7 55 63.6
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 1.8e-11 72.0 62 48.4
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 2.6e-10 68.2 62 50.0
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 1.3e-09 65.9 45 66.7
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 6.5e-09 63.5 62 51.6
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 8.5e-09 63.2 62 48.4
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 7.2e-08 60.1 42 66.7


User provided reference genes

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